Supporting material for "A Diffeomorphic Vector Field Approach to Analyze the Thickness of the Hippocampus from 7T MRI"

This archive contains supporting material for the following paper: 
Guyot, A.*, Graciano Fouquier, A.B.*, Gerardin, É.*, Chupin, M., Glaunès, J.A., Marrakchi-Kacem, L., Germain, J., Boutet, C., Cury, C., Hertz-Pannier, L., Vignaud, A., Durrleman, S., Henry, T.R., Van de Moortele, P.F., Trouvé, A., and Colliot, O., A Diffeomorphic Vector Field Approach to Analyze the Thickness of the Hippocampus from 7T MRI, IEEE Transactions on Biomedical Engineering, 2020, DOI: 10.1109/TBME.2020.2999941
* denotes equal first authors.

This article is available at: https://hal.inria.fr/hal-02359660

Specifically, it contains a manual segmentation of the hippocampal subregions of one post-mortem specimen (denoted as 'Subject 1R') from the Penn Hippocampus Atlas.

The Penn Hippocampus Atlas has been developed by P. Yushkevich et al. It is available at https://www.nitrc.org/projects/pennhippoatlas and presented in the following article:
Yushkevich, P.A., Avants, B.B., Pluta, J., Das, S., Minkoff, D., Mechanic-Hamilton, D., Glynn, S., Pickup, S., Liu, W., Gee, J.C. and Grossman, M., 2009. A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T. Neuroimage, 44(2), pp.385-398.

The segmentation was performed according to a protocol described in the appendix of the following article:
Guyot, A.^*, Graciano Fouquier, A.B.^*, Gerardin, É.^*, Chupin, M., Glaunès, J.A., Marrakchi-Kacem, L., Germain, J., Boutet, C., Cury, C., Hertz-Pannier, L., Vignaud, A., Durrleman, S., Henry, T.R., Van de Moortele, P.F., Trouvé, A., and Colliot, O., A Diffeomorphic Vector Field Approach to Analyze the Thickness of the Hippocampus from 7T MRI, IEEE Transactions on Biomedical Engineering, 2020, DOI: 10.1109/TBME.2020.2999941
^* denotes equal first authors.