Published October 27, 2019 | Version v1
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Correlation figure of metagenomics and metatranscriptomics sample

  • 1. Xue
  • 2. Lee

Description

Visualization codes from the 2nd "speeding up science workshop". This repository contains codes to plot and calculate correlation (linear regression) between metagenomic and metatranscriptomic sequencing results acquired from the same sample.

There is an example of visualizing gene abundances (DNA) compared to their expression levels (RNA) included in the binder. The data are from one Mediterranean site from the TARA Oceans project (https://science.sciencemag.org/content/348/6237/1261359.long). The metagenomics come from sample accession SAMEA2619782, and the metatransciptomics come from SAMEA2619784.

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