A biodiversity dataset graph: DataONE
Authors/Creators
Description
A biodiversity dataset graph: DataONE
The intended use of this archive is to facilitate meta-analysis of the Data Observation Network for Earth (DataONE). DataONE is a distributed infrastructure that provides information about earth observation data.
This dataset provides versioned snapshots of the DataONE network as tracked by Preston [2] between 2018-10-18 and 2019-10-03 using "preston update -u https://dataone.org".
The archive consists of 256 individual parts (e.g., preston-00.tar.gz, preston-01.tar.gz, ...) to allow for parallel file downloads. The archive contains three types of files: index files, provenance logs and data files. In addition, index files have been individually included in this dataset publication to facilitate remote access. Index files provide a way to links provenance files in time to establish a versioning mechanism. Provenance files describe how, when and where the DataONE content was retrieved. For more information, please visit https://preston.guoda.bio or https://doi.org/10.5281/zenodo.1410543).
To retrieve and verify the downloaded DataONE biodiversity dataset graph, first concatenate all the downloaded preston-*.tar.gz files (e.g., cat preston-*.tar.gz > preston.tar.gz). Then, extract the archives into a "data" folder. Alternatively, you can use the preston[2] command-line tool to "clone" this dataset using:
$ java -jar preston.jar clone --remote https://zenodo.org/record/3483218/files
After that, verify the index of the archive by reproducing the following provenance log history:
$ java -jar preston.jar history
<0659a54f-b713-4f86-a917-5be166a14110> <http://purl.org/pav/hasVersion> <hash://sha256/8c67e0741d1c90db54740e08d2e39d91dfd73566ea69c1f2da0d9ab9780a9a9f> .
<hash://sha256/3ed3acaca7ac57f546d0b8877c1927ab5e08c23eccaa8219600c59c77a72c685> <http://purl.org/pav/previousVersion> <hash://sha256/8c67e0741d1c90db54740e08d2e39d91dfd73566ea69c1f2da0d9ab9780a9a9f> .
<hash://sha256/857753997a7595a1b372b05641b58a25d9408b7ff08d557ce1fe8b73e4bd383f> <http://purl.org/pav/previousVersion> <hash://sha256/3ed3acaca7ac57f546d0b8877c1927ab5e08c23eccaa8219600c59c77a72c685> .
<hash://sha256/7ee0376f4c3f7aeeda36927a5211395e5da8201e810e8c7e638a0fe23d001e88> <http://purl.org/pav/previousVersion> <hash://sha256/857753997a7595a1b372b05641b58a25d9408b7ff08d557ce1fe8b73e4bd383f> .
<hash://sha256/68b4974d8ab7c4c7a7a4305065839b60ba460aaa862590b34c67877738feba90> <http://purl.org/pav/previousVersion> <hash://sha256/7ee0376f4c3f7aeeda36927a5211395e5da8201e810e8c7e638a0fe23d001e88> .
<hash://sha256/060a76d56255bf9482c951748c91291fddeeb20f180632132be1344e081b2372> <http://purl.org/pav/previousVersion> <hash://sha256/68b4974d8ab7c4c7a7a4305065839b60ba460aaa862590b34c67877738feba90> .
<hash://sha256/29357bdfab4548025f8a5743301f5c3c9146fa436c39e3c9e019fb9409ac9c42> <http://purl.org/pav/previousVersion> <hash://sha256/060a76d56255bf9482c951748c91291fddeeb20f180632132be1344e081b2372> .
<hash://sha256/3669cd95100d1d533eb8953ff4ec5092cbd8addb8879b3e6262191148a8a3ebb> <http://purl.org/pav/previousVersion> <hash://sha256/29357bdfab4548025f8a5743301f5c3c9146fa436c39e3c9e019fb9409ac9c42> .
<hash://sha256/8dc1663299359d271cb1b4c14ad521d0f1be67743689dd18016543dc1e097efb> <http://purl.org/pav/previousVersion> <hash://sha256/3669cd95100d1d533eb8953ff4ec5092cbd8addb8879b3e6262191148a8a3ebb> .
<hash://sha256/dc4903e8afee651db1d9bf509f20503bf9c8e89679c4bcffb46d5b97440cb6de> <http://purl.org/pav/previousVersion> <hash://sha256/8dc1663299359d271cb1b4c14ad521d0f1be67743689dd18016543dc1e097efb> .
<hash://sha256/f3bed9db3092c744604df5f50248a2ec36e564fe78a65f45c4190283bd61c807> <http://purl.org/pav/previousVersion> <hash://sha256/dc4903e8afee651db1d9bf509f20503bf9c8e89679c4bcffb46d5b97440cb6de> .
<hash://sha256/e3c7b3b14b2b792e3e2e560a1b2bef059ac93f777dee616b836317bc9cbfcbf7> <http://purl.org/pav/previousVersion> <hash://sha256/f3bed9db3092c744604df5f50248a2ec36e564fe78a65f45c4190283bd61c807> .
<hash://sha256/631a4531e7bb052816d28454bbeec3428d5e7bfd1f148c4f21ce63a6cf86c650> <http://purl.org/pav/previousVersion> <hash://sha256/e3c7b3b14b2b792e3e2e560a1b2bef059ac93f777dee616b836317bc9cbfcbf7> .
<hash://sha256/87de0898919d2212977a586965e930ae45bdd1366073591c808c208a635e2814> <http://purl.org/pav/previousVersion> <hash://sha256/631a4531e7bb052816d28454bbeec3428d5e7bfd1f148c4f21ce63a6cf86c650> .
To check the integrity of the extracted archive, confirm that each line produce by the command "preston verify" produces lines as shown below, with each line including "CONTENT_PRESENT_VALID_HASH". Depending on hardware capacity, this may take a while.
$ java -jar preston.jar verify
hash://sha256/e55c1034d985740926564e94decd6dc7a70f779a33e7deb931553739cda16945 file:/home/preston/preston-dataone/data/e5/5c/e55c1034d985740926564e94decd6dc7a70f779a33e7deb931553739cda16945 OK CONTENT_PRESENT_VALID_HASH 21580
hash://sha256/d0ddcc2111b6134a570bcc7d89375920ef4d754130cecc0727c79d2b05a9f81f file:/home/preston/preston-dataone/data/d0/dd/d0ddcc2111b6134a570bcc7d89375920ef4d754130cecc0727c79d2b05a9f81f OK CONTENT_PRESENT_VALID_HASH 2035
hash://sha256/472de9d1c9fd7e044aac409abfbfff9f12c6b69359df995d431009580ffb0f53 file:/home/preston/preston-dataone/data/47/2d/472de9d1c9fd7e044aac409abfbfff9f12c6b69359df995d431009580ffb0f53 OK CONTENT_PRESENT_VALID_HASH 1935
hash://sha256/b29879462cd43862129c5cf9b149c41ecd33ffef284a4dbea4ac1c0f90108687 file:/home/preston/preston-dataone/data/b2/98/b29879462cd43862129c5cf9b149c41ecd33ffef284a4dbea4ac1c0f90108687 OK CONTENT_PRESENT_VALID_HASH 1553
Note that a copy of the java program "preston", preston.jar, is included in this publication. The program runs on java 8+ virtual machine using "java -jar preston.jar", or in short "preston".
Files in this data publication:
--- start of file descriptions ---
-- description of archive and its contents (this file) --
README
-- executable java jar containing preston[2] v0.1.8. --
preston.jar
-- preston archives containing DataONE data files, associated provenance logs and a provenance index --
preston-[00-ff].tar.gz
-- individual provenance index files --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--- end of file descriptions ---
References
[1] Data Observation Network for Earth (DataONE, https://dataone.org) accessed from 2018-10-18 to 2019-10-03 with provenance hash://sha256/631a4531e7bb052816d28454bbeec3428d5e7bfd1f148c4f21ce63a6cf86c650 .
[2] https://preston.guoda.bio, https://doi.org/10.5281/zenodo.1410543 .
This work is funded in part by grant NSF OAC 1839201 from the National Science Foundation
Files
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2.8 MB | Download |
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md5:1b64eb4577a64840d4bdf8ffdb266795
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2.9 MB | Download |
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md5:730cb417164b465c1f7f26c6f70ad450
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2.9 MB | Download |
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md5:daed391ddfe98185eb34ecac195895cc
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2.8 MB | Download |
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md5:31fe50e63916528a3bd56b388d8734cd
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2.8 MB | Download |
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md5:93325435f91a19e5aa689a8881b9a74c
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3.1 MB | Download |
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md5:489080026622a85fcde78740a01f6510
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2.8 MB | Download |
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md5:f672ffd3ab69534817011b15062f3498
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3.0 MB | Download |
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md5:0d64075739590d917439076d5243822a
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2.9 MB | Download |
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md5:20bcb8a37a65c223d6eede08dfc6cb02
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2.7 MB | Download |
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md5:a7f30d218e12b3df2a76c535e3af78a9
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2.8 MB | Download |
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md5:bc2419c91f1573ccdf85d1f2e9f4db2b
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3.1 MB | Download |
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md5:34026554be9fbea8977075226f9fa4c2
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2.9 MB | Download |
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md5:da6d3bf47b80a966bf39289e38cde784
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3.1 MB | Download |
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md5:7ead30eb6fdc2642616e6ffe771d1882
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2.7 MB | Download |
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md5:5b0507417c41dea29f8c42a96e488037
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2.6 MB | Download |
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md5:5cc51418a8caf4b8ae1d54d4366beec1
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6.4 MB | Download |
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md5:eb362c9f222ec4758a615bb5402df30a
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2.7 MB | Download |
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md5:8d7c58688d454ddcaa7d668149acc841
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2.7 MB | Download |
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md5:3276f752b5b3c78995f3ff1ad14e5e5b
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2.9 MB | Download |
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md5:56dc2e005b61a247c624535859569ddf
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2.9 MB | Download |
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md5:9f6ac52d380062f663c2072a03c3e7e5
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3.2 MB | Download |
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md5:79a824d0c2ff9b1bfce708a87fd1ddcc
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2.7 MB | Download |
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md5:a88d4d623c6f1261c59d6d32006b2ffc
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22.1 MB | Download |
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md5:c803a1b94c4c46c7cec741979b98b4c7
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2.9 MB | Download |
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md5:f9ea90acc2729bab1909133b4bf09c12
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208.9 MB | Download |
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md5:24c56a6ce3d49aa91e5f9f742c8eae18
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3.0 MB | Download |
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md5:b46ef007a589aa3e93b53631234d2832
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3.0 MB | Download |
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md5:8804630fe0a39c73e30b36ecd26d8482
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3.1 MB | Download |
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md5:3c3026fbafdbe287b27021cf0c4df18f
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3.0 MB | Download |
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md5:4556f1af50461982f966f70b668816bb
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26.0 MB | Download |
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md5:5991c853ec34a949d2046a162ee5b46d
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4.2 MB | Download |
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md5:1b3bb76d34ee8bb9050f27db956d5ddb
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2.7 MB | Download |
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md5:0ff3fda6838fa4b31bcc028d54c0cce2
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2.9 MB | Download |
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md5:1f6a2b51d4a646eceb5f17266188e677
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3.0 MB | Download |
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md5:07d16e8f1b7ed1005e66209a1f687b8e
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2.8 MB | Download |
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md5:54944748cfee326ae67a249a3b4bcf12
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3.0 MB | Download |
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md5:9d54169d5674f6079a6e0b14263ded24
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2.9 MB | Download |
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md5:d0428a2f18ce355c93325fa4d8b3aab0
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3.0 MB | Download |
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md5:75c117e266e01af40be941d97ab6f7d7
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2.8 MB | Download |
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md5:5215f88033046f88b903fb1e838bb0ae
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2.9 MB | Download |
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md5:a3283d0e8c457ada0cfbad247e1e4bf7
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2.8 MB | Download |
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md5:83c291e49b4f9cb143fdde8fab85558f
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2.8 MB | Download |
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md5:1aff7191690a1abfdb29c5b193ea2172
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3.0 MB | Download |
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md5:f594537ccdfdce5eeadae5ecf06eded4
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2.9 MB | Download |
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md5:84b6d19d628bd88a836de6d67d80a37d
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3.0 MB | Download |
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md5:bb36bd2dac40495343e4a97a11c1cc7b
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2.9 MB | Download |
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md5:03549e5c641ca2ac7494931757ed4c1b
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2.7 MB | Download |
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md5:15a068d045c0e10cb97d263af0398a2b
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2.8 MB | Download |
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md5:d438fcd67fa14a632f7b2387eb32add1
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2.6 MB | Download |
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md5:dc1e786ea9f9e66cb09a917696f6e0b4
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2.5 MB | Download |
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md5:2d1eadc2bd66277a6ae711d42e7b5819
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2.6 MB | Download |
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md5:41c59217325bdd22244525f7d942add2
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2.9 MB | Download |
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md5:454f36bd70c7da74d2240e55a242bfe8
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2.7 MB | Download |
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md5:287a0d8068ed6b877d13f34916cf6f3d
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3.0 MB | Download |
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md5:946014f7aee77a3a14f9fe4ec497fcf8
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2.7 MB | Download |
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md5:d2dbb9d0b1a5159d5b9c009919ad0db5
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3.1 MB | Download |
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md5:7f80a5f0296f83e4571e354501f81a84
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2.7 MB | Download |
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md5:f172231a2c8fac3026ed52b561ad0fd5
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2.9 MB | Download |
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md5:f1d608a6d8010d406e95573bd923b7a1
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2.9 MB | Download |
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md5:42f27d8417c926f086c052d3bf159e92
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2.8 MB | Download |
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md5:c47ed7df2ae6d3c2f0637762b89212c9
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3.1 MB | Download |
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md5:5ad1ce2163df4053d9c6c368202a707b
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2.9 MB | Download |
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md5:bc8cd33d1ea1e849202dea4e1ffbade4
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3.0 MB | Download |
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md5:566a18ab8ec89edd047ec1546be93d53
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3.0 MB | Download |
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md5:7ec01fd24388197585f4caf859816c8e
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2.9 MB | Download |
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md5:12624d05f5d55d1f5e8dde2719bdcf97
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2.9 MB | Download |
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md5:67e41d1103e84bc5076c9bacf728f89f
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2.8 MB | Download |
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md5:f293d7b163bb3e4deb71b85ba1e4c082
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2.6 MB | Download |
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md5:03e9a362b28f82d821a81f8383e08829
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3.0 MB | Download |
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md5:9f268ff083b81ff50d5b7dfebba89fa3
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2.7 MB | Download |
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md5:97379c83ca0cb9794c301206084c1980
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2.9 MB | Download |
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md5:62c6a16d97dffd79681a087d2ec55db9
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3.2 MB | Download |
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md5:39807a47dbb3d6ae0ca4f1c54ecb0c50
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2.8 MB | Download |
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md5:7302ac8d9fb85793027e13aade2a9deb
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2.9 MB | Download |
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md5:c7064b139957ad9189321aabb677222a
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3.0 MB | Download |
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md5:2d72f89ed3c91f9b171ca92ac1c7a315
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2.9 MB | Download |
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md5:1af3df76cbb4e59d2cc6fef094e42679
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2.7 MB | Download |
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md5:32e5af2f854197ed9e1f44c548f955ac
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3.0 MB | Download |
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md5:dfa507d8a18a8fdb6dadc590a61d2b20
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2.9 MB | Download |
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md5:ce2e9ca34d2cf1dde704e26d4927d50c
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2.9 MB | Download |
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md5:84bacfc4bcb64055e637bdfe6cf05e96
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2.9 MB | Download |
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md5:cd7b5585340294e9e4e853e69d17c9be
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2.9 MB | Download |
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md5:0a353dd79da95ee490ef8a9354cb8ac8
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3.0 MB | Download |
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md5:72ef2b2b28f4bd38990af74c00a393cb
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2.8 MB | Download |
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md5:fc48049a1b9bdfaa6b3b4d045423caa0
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3.2 MB | Download |
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md5:31786a7e7e79f0c4d42b965a7df85a04
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2.8 MB | Download |
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md5:96a5ef78c87bb7ab3743f51562ed6d64
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2.7 MB | Download |
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md5:a44dee36c3d2a1a9936748ec6cfbef57
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2.7 MB | Download |
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md5:b9de6c4d00cdb53140aea21baae6a0ef
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3.0 MB | Download |
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md5:cf40b4bc9d0175fb5ca4c6016361177e
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3.2 MB | Download |
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md5:6b42a7851d843b2171dc93e46f450e4a
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2.6 MB | Download |
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md5:30ed3d45d03a51a8de879f6717cc8e05
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2.9 MB | Download |
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md5:b028d01e2d81a3022711a9604d869fbc
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2.9 MB | Download |
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md5:bfc01f5a97eb46847236348e77719459
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2.8 MB | Download |
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md5:50bc6a032005e955da91a9566898a51d
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2.9 MB | Download |
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md5:8c6fe0007ae0c6d2836920866c628009
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3.0 MB | Download |
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md5:fde806ef555e317379474e726fe90bd5
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2.9 MB | Download |
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md5:681f2820174a1d198a63cce80aee764c
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2.8 MB | Download |
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md5:eee5a7f15b1c086120d829c414b5f7eb
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3.1 MB | Download |
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md5:f4c3e4e03bece7705065e6b6cbe00b20
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2.9 MB | Download |
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md5:941d007193e8caa714289973111d820e
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3.1 MB | Download |
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md5:5bcffe357de13ce6c1ecf8a35fecf1e2
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3.0 MB | Download |
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md5:233f7f074824a41f4cccea91f4e04564
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2.9 MB | Download |
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md5:e54df279c4d711de0963955bcf11ddb4
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2.9 MB | Download |
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md5:6fc38a528f8e754c055a478ebe7ac2db
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3.0 MB | Download |
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md5:53a0ea350775e007dd774e839a81b172
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2.9 MB | Download |
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md5:557c5713b4493498e90cd689ad193610
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2.7 MB | Download |
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md5:622a7938ccd5f42f7319051c625d055d
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3.0 MB | Download |
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md5:3e142fe7533ee8d361044d080202564b
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3.0 MB | Download |
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md5:40f41ef5b2b2252091fedaa70402857f
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24.4 MB | Download |
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md5:389a968df2bd2e1f811fe01298cf0236
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3.1 MB | Download |
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md5:d6738f23cdf0f7bce6bb0e18000216e8
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2.7 MB | Download |
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md5:77c32be1be8c3c4e47ae41299f2d0764
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2.8 MB | Download |
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md5:1c3c399977f7f761725a891211e48b49
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3.1 MB | Download |
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md5:bb2af74cffea79f22899905ffb97bd7e
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2.6 MB | Download |
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md5:d554f836c3c6686dd56f7ee9b8f631df
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2.7 MB | Download |
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md5:f3de75fa233be023e993210859353857
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41.4 MB | Download |
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md5:97e82706f735c7d57fdc1e52633b8fcc
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2.9 MB | Download |
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md5:e2a3230625b3d93a1ff4afd1042238ac
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3.1 MB | Download |
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md5:f41bdc5ab287bdf83dd2dad9de721516
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3.0 MB | Download |
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md5:9fb59026163260314c4e2fe127516829
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2.8 MB | Download |
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md5:212ea8432081ca2da7653e3ef801b3b6
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2.6 MB | Download |
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md5:cca27f0db3e252d6ba84fa7e51cf9419
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2.9 MB | Download |
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md5:2a324bb7b750173a236030e0dcbf7a2a
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2.9 MB | Download |
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md5:b7011d11666fd0e9be6beb12f3fb7f26
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3.1 MB | Download |
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md5:44f02f8bdd3c054c22d9b9247cd98ab5
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2.8 MB | Download |
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md5:6b3c30f86244eb18db75d6b4f6a04dcb
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2.6 MB | Download |
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md5:7ce9812d4aaf927cf2f898d293eb0187
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2.8 MB | Download |
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md5:c6c4666895af2c7a51fe9a35500efab2
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3.0 MB | Download |
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md5:f9ccf6903409a51294aeb44d088583c4
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2.6 MB | Download |
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md5:a3f6d7154a25e984fed546783519defa
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3.0 MB | Download |
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md5:f7bd727fa8cfc39002ef7056c6ef1839
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2.8 MB | Download |
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md5:785f100b3ce5b08b3cec96f495769b67
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26.2 MB | Download |
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md5:9e62596cf55391a834aa4f895156560f
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2.9 MB | Download |
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md5:e940cc8ffde19965c55d1f29a97cb622
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2.7 MB | Download |
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md5:a4513d5687862ed10b29beea4685cab0
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2.9 MB | Download |
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md5:a0f35bd9ff344899036a07862717ccf4
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3.0 MB | Download |
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md5:606d79e2fbd478310353ae0679012209
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3.0 MB | Download |
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md5:fd87ff3e21166150959f9ca5b9d9c760
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3.1 MB | Download |
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md5:352b5e98d3ff787482bedb95a90de3ed
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2.9 MB | Download |
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md5:e7712932b988a48bdf0ec41637555710
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2.7 MB | Download |
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md5:84db758ac34022be0377fb7fc8cbbdb1
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2.8 MB | Download |
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md5:139f42d423a5dea624d8efae010ee8a9
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2.9 MB | Download |
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md5:83ea9cc4ff3514a0e4c9730849a0f712
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3.3 MB | Download |
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md5:a9e02b3d06c77515d37e3782111f1d55
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2.8 MB | Download |
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md5:d4ed3430e61017729bbabd357737f604
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17.1 MB | Download |
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md5:3f80bc12e256402d5d77f72422e1dce0
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7.4 kB | Download |