breedR: breedR 0.11

Install breedR from package repository avoiding package devtools

New vignette: Computing Heritability

Access to inverse Average-Information matrix

Automatic computation of heritability for genetic models and method 'ai'

remlf90() interface to PROGSF90 OPTIONS

Much more exhaustive testing ensures greater stability.

New datasets Douglas (multi-site) and Larix (repeated measurements)

Separate R-package from BLUPF90 binaries. Exploit 64bit architectures.

Several bugfixes. Notably, the empirical variogram computation and memory issues with the AR model.

Full internal refactoring (with few 'visible' changes in the interface)

model.matrix() no longer separates fixed and random effects. It returns the same structure as ranef() which is more intuitive.

vcov() works now with any of the non-diagonal random effects.

New 'generic' model component allows passing a list of arbitrary incidence and covariance/precision matrices

Optimized splines model. It runs about 5x faster.