Published September 20, 2019
| Version v2.1.3
Software
Open
taoliu/MACS: MACS v2.1.3
Authors/Creators
- 1. Roswell Park Comprehensive Cancer Center
- 2. Radboud University
- 3. University of Freiburg
- 4. @common-workflow-language
- 5. Macquarie University
- 6. National Institutes of Health (NIH), National Institute of Child Health and Human Development (NICHD)
- 7. University of Colorado School of Medicine
- 8. @aertslab
- 9. Duke University
Description
2019-09-19 Tao Liu vladimir.liu@gmail.com
* Features added
1) Support Docker auto-deploy. PR #309
2) Support Travis CI auto-testing, update unit-testing
scripts, and enable subcommand testing on small datasets.
3) Update README documents. #297 PR #306
4) `cmbreps` supports more than 2 replicates. Merged from PR #304
@Maarten-vd-Sande and PR #307 (our own chi-sq test code)
5) `--d-min` option is added in `callpeak` and `predictd`, to
exclude predictions of fragment size smaller than the given
value. Merged from PR #267 @shouldsee.
6) `--buffer-size` option is added in `predictd`, `filterdup`,
`pileup` and `refinepeak` subcommands. Users can use this option
to decrease memory usage while there are a large number of contigs
in the data. Also, now `callpeak`, `predictd`, `filterdup`,
`pileup` and `refinepeak` will suggest users to tweak
`--buffer-size` while catching a MemoryError. #313 PR #314
* Bugs fixed
1) #265 Fixed a bug where the pseudocount hasn't been applied
while calculating p-value score in ScoreTrack object.
2) Fixed bdgbroadcall so that it will report those broad peaks
without strong peak inside, a consistent behavior as `callpeak
--broad`.
3) Rename COPYING to LICENSE.
Files
taoliu/MACS-v2.1.3.zip
Files
(79.2 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/taoliu/MACS/tree/v2.1.3 (URL)