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Published September 2, 2019 | Version v1.3

plantinformatics/pretzel-input-generator: v1.3

Authors/Creators

  • 1. CSIRO

Description

New genome assemblies:
  • Triticum turgidum subsp. durum (Svevo)
  • Triticum aestivum IWGSC RefSeq v2.0 (Chinese Spring) (no gene annotations)
New versions:
  • Brachypodium distachyon v3.0 (Ensembl plants release 43)
  • Hordeum vulgare (Morex V2)
  • Oryza sativa RGAP 7.0 (MSU) (alternative annotations)
  • Triticum dicoccoides (Wild emmer) WEWv2.0 (annotations transferred from v1)_
Marker placement included as path in the pipeline
  • 90k markers placed on all included genomes #26
Functional changes and assorted bug fixes
  • Blocks, Features (genes, markers) and aliases counts recorded per output JSON and distributed in a handful of flat files in the final archive #23
  • Consistent use of range and value fields #15
  • Multiple annotations per genome allowed for local files #24
Files:

Use the complete data set or the no_LC subset which excludes the low confidence (LC) gene predictions and associated aliases. Refer to doc/upload.md for upload instructions.

Files

plantinformatics/pretzel-input-generator-v1.3.zip

Files (333.9 kB)

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md5:5655f23d83016443a2063d4f56cd7da7
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Additional details