Published September 2, 2019
| Version v1.3
Software
Open
plantinformatics/pretzel-input-generator: v1.3
Description
New genome assemblies:
- Triticum turgidum subsp. durum (Svevo)
- Triticum aestivum IWGSC RefSeq v2.0 (Chinese Spring) (no gene annotations)
- Brachypodium distachyon v3.0 (Ensembl plants release 43)
- Hordeum vulgare (Morex V2)
- Oryza sativa RGAP 7.0 (MSU) (alternative annotations)
- Triticum dicoccoides (Wild emmer) WEWv2.0 (annotations transferred from v1)_
- 90k markers placed on all included genomes #26
- Blocks, Features (genes, markers) and aliases counts recorded per output JSON and distributed in a handful of flat files in the final archive #23
- Consistent use of range and value fields #15
- Multiple annotations per genome allowed for local files #24
Use the complete data set or the no_LC subset which excludes the low confidence (LC) gene predictions and associated aliases. Refer to doc/upload.md for upload instructions.
Files
plantinformatics/pretzel-input-generator-v1.3.zip
Files
(333.9 kB)
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md5:5655f23d83016443a2063d4f56cd7da7
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Additional details
Related works
- Is supplement to
- https://github.com/plantinformatics/pretzel-input-generator/tree/v1.3 (URL)