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Published July 30, 2019 | Version 1.6.0
Software Open

nextgenusfs/funannotate: funannotate v1.6.0

Authors/Creators

  • 1. University of California-Riverside

Description

  • support for antiSMASH v5.0 output #292 #299
  • add snap and glimmerhmm request from #240. BUSCO is now run by default in funannotate predict if there is no PASA data -- BUSCO results used to train glimmerhmm and snap
  • improved Phobius results parsing #259
  • multi-threaded funannotate clean, thanks to @bogemad
  • fix database links #300
  • multi-threaded hisat2-build #303
  • write all output files directly from tbl format -- fix bug associated with multi-transcript parsing from GenBank files
  • bug fix for protein2genome exonerate mapping
  • bug fixes for funannotate train and funannotate update
  • added --min_coverage option to trinity workflow and set default to 5
  • bug fixes for codingquarry predictions (RNA-seq only)
  • improved error message for repeatmodeler/masker #298
  • bug fix for remote searches
  • bug fix for parsing input folders in annotate #302
  • updated conda install docs --> which seems futile to keep this current....

Files

nextgenusfs/funannotate-1.6.0.zip

Files (8.9 MB)

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Additional details

Related works

Is supplement to
https://github.com/nextgenusfs/funannotate/tree/1.6.0 (URL)