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Published December 31, 2010 | Version v1
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Genetic diversity of Arabica coffee (Coffea arabica L.) collections

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Teressa, Alemayehu, Crouzillat, Dominique, Petiard, Vincent, Brouhan, Pier (2010): Genetic diversity of Arabica coffee (Coffea arabica L.) collections. Ejast 1 (1): 63-79, DOI: 10.5281/zenodo.3257636

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urn:lsid:plazi.org:pub:F20AFFCCFFD0F4327178FFDAFF9A1252

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Figure: 10.5281/zenodo.3257638 (DOI)
Figure: 10.5281/zenodo.3257640 (DOI)

References

  • Aga, E, Bryngelsson, T, Bekele E. and Solomon B. 2003. Genetic diversity of forest Arabica coffee (Coffea arabica L.) in Ethiopia as revealed by random amplified polymorphic DNA (RAPD) analysis.Hereditas 138(1):36-46. Amaha, M and Bellachew, B.1987. Genotype- Environmental interactions in coffee (Coffea arabica L.). ASIC 12th. pp. 476- 481. Montreux.
  • Anthony, F, Bertrand, B, Quiros, O, Wilches, A, Lashermes, P, Berthaud. J and Charrier A. 2001a. Genetic diversity of wild coffee (Coffea arabica L.) using molecular markers. Euphytica 118:53- 65.
  • Anthony, F, Combes, MC, Astorga. C, Bertrand, B, Graziosi, G and Lashermes, P. 2002. The origin of cultivated Coffea arabica L. varieties revealed by AFLP and SSR markers. Theory of Applied Genetics 104:894- 900.
  • Anthony, F, Combes, MC, Herrera, JC, Prakash, NS, Berthand, B and Lashermes, P. 2001b. Genetic Diversity and introgression analysis in coffee (Coffea arbica L.) using molecular markers.ASIC 19th. Trieste, Italy.
  • Bellachew, B. 1997. Arabica coffee breeding in Ethiopia: A Review. ASIC 17th. Nairobi, Kenya.
  • Berthaud, J and Charrier A. 1998. Genetic Resources of Coffea. pp. 1-42. In Clarke RJ and Marcrae R (eds). Coffee Vol.4 Agronomy, Elsevier Applied Science, London and New York.
  • Berthou, F and Trouslot P. 1979. Analysis of Enzymatic polymorphism in the genus Coffea: Adaptation of an electrophoresis method in serious: first results. ASIC 18th. Abidjan. pp. 373 - 383.
  • Carneiro, M.F. 1999. Advances in coffee biotechnology.AgBiotechNet 1:1-8.
  • Carvalho, V.P. (1988). Principles and practices of coffee plant breeding for productivity and quality factors:Coffea arabica. pp.1-42. In Clarke RJ and Marcrae R (eds). Coffee Vol.4 Agronomy. Elsevier Applied Science, London and New York.
  • Charrier, A. 1980. Conservation of the genetic resources of the Genus Coffea. ASIC 9th. Londres. pp. 507-518.
  • Charrier, A and Eskes, AB. 2004. Botany and Genetics of coffee. pp. 25-55. In Wintgens JN (ed). Coffee: growing, processing, sustainable production. Wiley.VCH, Weiheim.
  • Combes, MC, Andrzejewski, S, Anthony, F, Bertrand, B, Rovelli, P, Graziosi, G and Lashermers, P. 2000. Characterization of microsatellite loci in Coffea arabica and related coffee species. Molecular Ecology9:1171-1193.
  • Coulibaly, I, Louarn, J, Lorieux, M, Hamon, S and Noirot, M. 2001. Genetic map of a backcross between C. canephora P. and C. heterocalyx and autogamy gene location.ASIC 19th. Trieste, Italy.
  • Coulibaly, I, Noirot, M, Lorieux, M and Charrier, A. 2002. Introgression of self- compatibility from Coffea heterocalyx to cultivated species Coffea canephora. Theory of Applied Genetics 105:994-999.
  • Cristancho, MA, Chaparro, AP, Cortina, HA and Gaitan, AL. 2004a. Genetic variability of Coffea arabica L. accessions from Ethiopia evaluated with RAPDs. ASIC 20th. Bangalore, India.
  • Cristancho, MA, Gaitan, AL, and McCouch, SR. 2004b. Analysis of expressed sequence tags (ESTs) and Microsatellite sequences in coffee (Coffea arabica). ASIC 20th. Bangalore, India.
  • Crouzillat, D, Rigoreau, M, Bellanger, L, Priyono, P, Mawardi, S, Ahrudi, SY, McCarthy, J, Tanksley, S, Zaenudin, I and Petiard, V. 2004. A Robusta consensus genetic map using RFLP and microsatellite markers for the detection of QTL. ASIC 20th. Bangalore, India.
  • Denich, M and Gatzweiler, F. 2006. Wild Arabica coffee in the montane rainforests of Ethiopia: An invaluable resource for coffee breeding.ASIC 21st. Montpellier, France.
  • Dufour, M, Hamon, P, Noirot, M, Risterucci, AM, Brottier, P, Vico, V and Leroy,T. 2001. Potential use of SSR markers for Coffea Spp. Genetic mapping.ASIC 19th. Trieste, Italy.
  • Eskes, AB and Leroy, Th. 2004. Coffee Selection and Breeding. Pp. 57-86. In Wintgens J N (ed). Coffee: Growing, Processing, Sustainable Production: A Guidebook for Growers, Processors, Traders, and Researchers. Welley-VCH Verlag GmbH & KGaA.
  • Geletu, KT, Govers, K, Bekele, E and Borsch, T. 2006. Genetic Diversity of Wild Coffea arabica in Ethiopia: Analyses based on plastid, ISSR and Microsatellite markers. ASIC 21st. Montpellier, France. Gole, TW. 2003. Vegitation of the Yayu Forest in SW Ethiopia: Impacts of Human Use and Implication for In Situ Conservation of Wild Coffea arabica L. Populations. Ecology and Development Series No.10, Cuvillier Verlag, Gottingen.
  • Gole, T.W, Denich, M, Teketay, D and Vlek, P.L.G. 2002. Human impacts on Coffea arabica genetic pool in Ethiopia and the need for its in-situ conservation. pp. 237-247. In Engels, T, Ramanatha Rao,V, Brown, AHD and Jackson M (eds). Managing plant genetic diversity. CAB International/ IPGRI.
  • Herrera, JC, Combes, MC, Anthony, F and Lashermes, P. 2001. Efficient use of coffee genetic resources: Molecular analyses of genome interactions in the arbusta hybrid (Coffea arabica X C. canephora).ASIC 19th. Trieste, Italy.
  • Hintze, J. (2006). NCSS, PASS and GESS. NCSS. Kaysville, Utah.
  • Lashermes, L, Trouslot, P, Anthony, F, Combes, MC and Charrier, A. 1996. Genetic diversity for RAPD markers between cultivated and wild accessions of Coffea arabica. Euphytica87:59-64.
  • Lashermes, P, Combes, MC, Cros, J, Trouslot, P, Anthony, F and Charrier, A. 1995. Origin and genetic diversity of Coffea Arabica L. based on DNA molecular markers.ASIC, 16th. Kyoto.
  • Lashermes, P, Comes, MC, Trouslot, P, Anthnony, F, Hamon, S and Charrier, A. 1999. Molecular characterization and origin of the Coffea Arabica L. genome. Molecular Genomics and Genetics 261:259-266.
  • Lashermes, P, Agwanda, CO, Anthony, F, Combes, MC, Trouslot, P and Charrier, A.1997. Molecular marker-assisted selection: A powerful approach for coffee improvement. ASIC 17th. Nairobi, Kenya.
  • Lin, C, Mueller, LA, McCarthy, J, Crouzillat, D, Petiard, V and Tanksley, SD. 2005. Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts. Theory of Applied Genetics 112:114-130.
  • Maluf, MP, Silvestrini, M, Ruggiero, Ruggiero, LM. de C, Filho, OG and Colombo, CA. 2005. Genetic diversity of cultivated Coffea Arabica inbred lines assessed by RAPD, AFLP and SSR marker systems. Science Agriculture (Piracicaa, Braz.) 62(4):373 -373.
  • Manifesto, MM, Schlatter, AR, Hopp, HE. Suarez, EY and Dubcovsky, J. 2001. Quantitative Evaluation of genetic diversity in Wheat germplasm using molecular markers. Crop Science 4:682- 690.
  • Moncada, P. 2004. Characterization of simple sequence length polymorphisms (SSLP) in a sample of Coffea spp. Germplasm. ASIC 20th. Bangalore, India.
  • Moncada, P and McCouch S. 2004. Simple sequence repeats diversity in diploid and tetraploid Coffea species. Genome 47:501-509.
  • Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Nat. Acad. Sci. USA. Vol. 70, No. 12, pp. 3312-3323.
  • Orozco-Castillo, C, Chalmers, K.J, Waugh, R and Powell, W. 1994. Detection of genetic diversity and selective gene introgression in coffee using RAPD markers. Theory of Applied Genetics 87:934-940.
  • Prakash, SN, Combes, MC, Naveen, SK, Graziosi, G and Lashermes, P. 2001. Application of DNA marker technologies in characterizing genome diversity of selected coffee varieties and accessions from India. ASIC 19th. Trieste, Italy.
  • QIAGEN. 2006. DNeasy® Plant Handbook (http://www.qiagen.com).
  • Raus, PM, Raus, CF, Rampim, L, Carvalho, VP, Raus, EA and Sera, T. 2003. Genetic relationship in Coffea species and parentage determination of interspecific hybrids using ISSR (Inter- Simple Sequence Repeat) markers. Genetics and Molecular Biology 26(3):319- 327.
  • Rovelli, P, Mettulio, R, Anthony, F, Anzueto, F, Lashermes, P, and Graziosi, G. 2000. Microsatellite in Coffea arabica L. pp.123-133. In Sera T, Soccol CR, Pandey A and Roussos S (eds) Coffee biotechnology and quality. Kluwer Academic Publishers, Dordrecht, Netherlands. Schmitt, C, Senbeta, F, Denich, MN, Preisinger, H, Woldemariam, T and Demissew, S. 2005. Sustainable management of the montane rainforests with wild coffee (Coffea arabica L.) in the Bonga region of southwest Ethiopia. Conference on International Agricultural Research for development. October 11-13, 2005. Tropentag, Stuttgart-Hohenheim, Germany.
  • Selvi, A, Nair, NV, Balasundaram, N and Mohapatra, T. 2003. Evaluation of maize microsatellite markers for genetic diversity analysis and fingerprinting in sugarcane. Genome 46:393-403.
  • Senbeta, F and Denich, M. 2006. Effects of wild coffee management on species diversity in the Afromontane rainforests of Ethiopia. Forest Ecology and Management 23(2):68-74.
  • Silvarolla, MB, Mazzafera, P and Alves de Lima, MM. 2000. Caffeine content of Ethiopian Coffea arabica beans. Genetics and Molecular Biology. 23(1):213-215.
  • Silvarolla, MB, Mazzafera, P and Fazvoli, LC. 2004. A naturally decaffeinated Arabica coffee. Nature. 429. Pp 826.(www.nature.com/naturre).
  • Steiger, DL, Nagai, C, Moore, PH, Morden, CW, Osgoog, RV and Ming, R. 2002. AFLP analysis of genetic diversity within and among Coffea arabica cultivars. Theory of Applied Genetics 185:189-215.
  • Weising, K, Nybom, H, Wolff, K and Kahl, G. 2005. DNA Fingerprinting in Plants: Principles, Methods, and Applications. 2nd ed. CRC Press, Taylor and Francis Group.