FitHiChIP: Identification of significant chromatin contacts from HiChIP data
Authors/Creators
- 1. Postdoctoral Researcher, La Jolla Institute for Immunologyy, La Jolla, CA 92037, USA
- 2. Associate Professor, La Jolla Institute for Immunologyy, La Jolla, CA 92037, USA
- 3. Assistant Professor, La Jolla Institute for Immunology, and UC San Diego, School of Medicine, La Jolla, CA 92037, USA
Description
FitHiChIP is a computational method for identifying chromatin contacts among regulatory regions such as enhancers and promoters from HiChIP/PLAC-seq data.
Functionalities of FitHiChIP include:
1) Calling significant interactions / loops / contacts from a HiChIP / PLAC-seq data
2) Identifying peaks (enriched segments) from a HiChIP data (i.e. HiChIP peak caller)
3) Finding differential loops among non-differential loci between two different categories of HiChIP samples, each with one or more replicates.
GitHub page: github.com/ay-lab/FitHiChIP
Documentation: https://ay-lab.github.io/FitHiChIP/
Citation: Please check the above documentation regarding citation of FitHiChIP
About this repository: All the data and results provided here correspond to the published manuscript. The file Data_Summary.xlsx summarizes for each figure, corresponding tables storing the related datasets.
Files
FitHiChIP_Source_Data_June2019.zip
Files
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Additional details
Related works
- Is supplement to
- 10.1101/412833 (DOI)