There is a newer version of the record available.

Published June 5, 2019 | Version 1.8.8
Software Open

cancerit/cgpCaVEManPostProcessing: 1.8.8 - unmatched normal panel processing

Authors/Creators

  • 1. @cancerit Cancer Genome Project, Wellcome Sanger Institute
  • 2. Cancer Genome Project, Wellcome Trust, Sanger Institute

Description

Depending on tools used to manipulate the VCF form of the unmatched normal panel there are multiple possible formats for a sample genotype where no data was collected.

This hotfix includes the following modifications

  1. Legacy and new versions of flagging code will consider 0:.:.:.:., -, . as "no data for sample"
  2. convertVCFUnmatchedToBed.pl updated as in (1).

If you are using pre-generated normal panels from our FTP site this doesn't affect you and there is no need for urgent upgrade.

Files

cancerit/cgpCaVEManPostProcessing-1.8.8.zip

Files (800.9 kB)

Name Size Download all
md5:b430dc68177fa926d0cf8fac10a15089
800.9 kB Preview Download

Additional details

Related works

Is supplement to
https://github.com/cancerit/cgpCaVEManPostProcessing/tree/1.8.8 (URL)