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Published February 21, 2017 | Version v1.15.0
Software Open

broadinstitute/viral-ngs: v1.15.0

Authors/Creators

  • 1. Broad Institute
  • 2. Broad Institute of MIT and Harvard
  • 3. MIT
  • 4. DNAnexus

Description

New:

  • Improvements to the pipeline to support single-end reads in additional stages, including the depletion, filtering, and metagenomic steps (blastn, bmtagger, trimmomatic, mvicuna, kraken)
  • Scripts added related to auto deployment of viral-ngs conda package Updated/changed:
  • novoalign 3.04.04 -> 3.06.05

Files

broadinstitute/viral-ngs-v1.15.0.zip

Files (46.3 MB)

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md5:c2968acfdade9afaadba4988f606433b
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Additional details

Related works

Is supplement to
https://github.com/broadinstitute/viral-ngs/tree/v1.15.0 (URL)