There is a newer version of the record available.

Published May 22, 2019 | Version 2
Dataset Open

Dataset for genes and gene variants from familial gastroschisis

Authors/Creators

  • 1. Universidad Autónoma de Nuevo León, Department of Genetics, School of Medicine and University Hospital Dr. José Eleuterio González
  • 2. Instituto Tecnológico de Tijuana, Department of Systems and Computing

Description

The dataset consists of records from whole exome sequecing and bioinformatic analysis which includes genes and gene variants from a Mexican family with recurrence for gastroschisis (two affected half-sisters with gastroschisis, mother, and father of the proband).

Release of this dataset was based on the Human Genome annotation, GRCh37/hg19.

The full list of tables is described in the file READ ME and remain available in csv files.

 

Files

Dataset for genes and gene variants from familial gastroschisis V2.zip

Files (6.3 MB)

Additional details

Related works

Is new version of
10.5281/zenodo.2673050 (DOI)

References

  • Chen J et al. ToppGene Suite for gene list enrichment analysis and candidate gene prioritization. Nucleic Acids Res 2009;37:W305–W311.
  • Mi H et al. PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements. Nucleic Acids Res 2017;45:D183–D189.
  • Salinas-Torres VM et al. Bioinformatic analysis of gene variants from gastroschisis recurrence identifies multiple novel pathogenetic pathways: implication for the closure of the ventral body wall. Int J Mol Sci 2019;20:2295.
  • SNP & Variation Suite ™, Version 8x. (2018, August 31). Golden Helix Inc. Retrieved from http://www.goldenhelix.com
  • Szklarczyk D et al. The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. Nucleic Acids Res 2017;45:D362–D368.
  • Zerbino DR et al. Ensembl 2018. Nucleic Acids Res 2018;46:D754-D761.