Published September 8, 2015
| Version v1
Software
Open
The khmer project v2.0
Authors/Creators
- Crusoe, Michael R.1
- Alameldin, Hussien F.2
- Awad, Sherine3
- Bucher, Elmar4
- Caldwell, Adam5
- Cartwright, Reed6
- Charbonneau, Amanda7
- Constantinides, Bede8
- Edvenson, Greg9
- Fay, Scott10
- Fenton, Jacob11
- Fenzl, Thomas
- Fish, Jordan11
- Garcia-Gutierrez, Leonor12
- Garland, Phillip13
- Gluck, Jonathan14
- González, Iván15
- Guermond, Sarah
- Guo, Jiarong16
- Gupta, Aditi1
- Herr, Joshua R.1
- Howe, Adina17
- Hyer, Alex18
- Härpfer, Andreas19
- Irber, Luiz11
- Kidd, Rhys
- Lin, David20
- Lippi, Justin
- Mansour, Tamer21
- McA'Nulty, Pamela22
- McDonald, Eric11
- Mizzi, Jessica23
- Murray, Kevin D.24
- Nahum, Joshua R.25
- Nanlohy, Kaben
- Nederbragt, Alexander Johan26
- Ortiz-Zuazaga, Humberto27
- Ory, Jeramia28
- Pell, Jason11
- Pepe-Ranney, Charles29
- Russ, Zachary N30
- Schwarz, Erich31
- Scott, Camille11
- Seaman, Josiah32
- Sievert, Scott33
- Simpson, Jared34
- Skennerton, Connor T.35
- Spencer, James36
- Srinivasan, Ramakrishnan37
- Standage, Daniel38
- Stapleton, James A.39
- Stein, Joe
- Steinman, Susan R40
- Taylor, Benjamin11
- Trimble, Will41
- Wiencko, Heather L.42
- Wright, Michael11
- Wyss, Brian11
- Zhang, Qingpeng11
- zyme, en
- Brown, C. Titus43
- 1. Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA
- 2. Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI 48824, USA
- 3. Population Health and Reproduction, University of California, Davis, Davis, CA 95616, USA
- 4. Oregon Health and Science University, Department of Biomedical Engineering, 2730 SW Moody Ave CL3G, Portland, OR 97201, USA
- 5. Biology Department, San Jose State University, San Jose, CA 95192, USA
- 6. School of Life Sciences and The Biodesign Institute, Arizona State University, Tempe, AZ 85287-5301, USA
- 7. Genetics, Michigan State University, East Lansing, MI 48824, USA
- 8. Computational and Evolutionary Biology, Faculty of Life Sciences, University of Manchester, Manchester, M13 9PT, UK
- 9. Micron Technology, Seattle, WA 98109, USA
- 10. Invitae, San Francisco, CA 94107, USA
- 11. Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA
- 12. Mathematics Institute, University of Warwick, CV4 7AL, Coventry, UK
- 13. Eastlake Data, Seattle, WA, 98105-2601
- 14. Graduate Program, University of Maryland, College Park, MD, 20742, USA
- 15. Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA 02129, USA
- 16. Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA
- 17. Department of Agricultural and Biosystems Engineering, Iowa State University, Ames, IA 50014, USA
- 18. Department of Biology, University of Utah, Salt Lake City, UT, 84112, USA
- 19. ConSol* Software GmbH, 81669 München, Germany
- 20. Verdematics, Fremont, CA, 94539, USA
- 21. Clinical Pathology, Mansoura University, Mansoura, Egypt., Population Health and Reproduction, University of California, Davis, Davis, CA 95616, USA
- 22. Addgene, Cambridge, MA, 02139, USA
- 23. Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA
- 24. ARC Centre of Excellence in Plant Energy Biology, The Australian National University, Canberra, ACT, Australia
- 25. BEACON Center, Michigan State University, East Lansing, MI 48824, USA
- 26. Centre for Ecological and Evolutionary Synthesis, Dept. of Biosciences, University of Oslo, 0316 Oslo, Norway
- 27. Department of Computer Science, Rio Piedras Campus, University of Puerto Rico, San Juan, PR 00936, USA
- 28. Biochemistry, St. Louis College of Pharmacy, St. Louis, MO 63110, USA
- 29. Crop and Soil Sciences, Cornell University, Ithaca, NY 14850, USA
- 30. Department of Bioengineering, UC Berkeley, Berkeley, CA 94709, USA
- 31. Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853-2703, USA
- 32. Data Visualization, Newline Technical Innovations, Windsor, CO 80550, USA
- 33. Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN 55455, USA
- 34. Ontario Institute for Cancer Research, Toronto, Ontario, M5G 0A3, Canada., Computer Science, University of Toronto, Toronto, Ontario, M5S 3G4, Canada
- 35. Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125, USA
- 36. Dept of Physics and Dept of Materials, Imperial College London, London SW7 2AZ, UK
- 37. Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA
- 38. Department of Biology, Indiana University, Bloomington, IN 47405, USA;, Bioinformatics and Computational Biology Graduate Program, Iowa State University, Ames, IA 50011, USA
- 39. Chemical Engineering & Materials Science, Michigan State University, East Lansing, MI 48824, USA
- 40. The New York Eye and Ear Infirmary of Mount Sinai, New York, NY 10010, USA
- 41. Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL, USA
- 42. Department of Genetics, Smurfit Institute, Trinity College Dublin, Dublin 2, Ireland
- 43. Computer Science and Engineering & Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, Population Health and Reproduction, University of California, Davis, Davis, CA 95616, USA
Description
The source code for version 2.0 of the khmer project.
http://khmer.readthedocs.org/
Files
Files
(25.1 MB)
| Name | Size | Download all |
|---|---|---|
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md5:3578c8ac125d99bd2e83ddd12dfb3c2d
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25.1 MB | Download |
Additional details
Related works
- Has part
- http://khmer.readthedocs.org/en/v2.0/ (URL)
- Is supplement to
- 10.12688/f1000research.6924.1 (DOI)