stackr: New in v.0.1.3: Map-independent imputations of a VCF

This new release enable map-independent imputations of a VCF file created by STACKS. Two options are available for imputations: using Random Forest or the most frequent category.

Before imputations, the VCF file can be filtered with:

• a whitelist of loci (to keep only specific loci...)
• a blacklist of individuals (to remove individuals or entire populations...)

Also, a list of genotypes with bad coverage and/or genotype likelihood can be supplied to erase the genotypes before imputations (for more details look at the function: blacklist_erase_genotype).