Biodiversity Literature Repository

Submit to community
Liberated Data
Published December 31, 2016 | Version v1
Journal article Restricted

Molecular systematics and taxonomic status of three latitudinally widespread nototheniid (Perciformes: Notothenioidei) fishes from the Southern Ocean

Authors/Creators

Description

Miya, Tshoanelo, Gon, Ofer, Mwale, Monica, Poulin, Elie (2016): Molecular systematics and taxonomic status of three latitudinally widespread nototheniid (Perciformes: Notothenioidei) fishes from the Southern Ocean. Zootaxa 4061 (4): 381-396, DOI: 10.11646/zootaxa.4061.4.4

Files

Restricted

The record is publicly accessible, but files are restricted. <a href="https://zenodo.org/account/settings/login?next=https://zenodo.org/records/270387">Log in</a> to check if you have access.

Linked records

Additional details

Cites
Publication: 10.1016/S0924-7963(02)00243-9 (DOI)
Publication: 10.1016/j.tree.2004.10.004 (DOI)
Publication: 10.3354/meps11061 (DOI)
Publication: 10.1038/nmeth.2109 (DOI)
Publication: 10.1007/s00300-014-1620-9 (DOI)
Publication: 10.1098/rspb.2002.2218 (DOI)
Publication: 10.1007/s00300-014-1623-6 (DOI)
Publication: 10.1007/s00300-008-0489-x (DOI)
Publication: 10.1016/j.quascirev.2010.04.027 (DOI)
Publication: 10.1007/BF01731581 (DOI)
Publication: 10.1006/mpev.1995.1039 (DOI)
Publication: 10.1242/jeb.00620 (DOI)
Publication: 10.1093/bioinformatics/btm404 (DOI)
Publication: 10.1093/bioinformatics/btp187 (DOI)
Publication: 10.1017/S0016756801005039 (DOI)
Publication: 10.1017/s0954102015000413 (DOI)
Publication: 10.1016/j.ympev.2007.11.027 (DOI)
Publication: 10.1073/pnas.1115169109 (DOI)
Publication: 10.1111/j.1095-8649.2001.tb02268.x (DOI)
Publication: 10.1134/S0032945211050146 (DOI)
Publication: 10.1016/j.gloplacha.2014.07.017 (DOI)
Publication: 10.1017/S0954102008001120 (DOI)
Publication: 10.1093/sysbio/49.2.369 (DOI)
Publication: 10.1007/s00300-012-1173-8 (DOI)
Publication: 10.1093/molbev/mst197 (DOI)
Publication: 10.3354/meps130047 (DOI)
Has part
Dataset: http://table.plazi.org/id/F9D772FE0C55FFEDFFE4E804FEC2012A (URL)
Figure: 10.5281/zenodo.270388 (DOI)
Dataset: http://table.plazi.org/id/F9D772FE0C51FFE9FF0EEABBFE1703DE (URL)
Dataset: http://table.plazi.org/id/F9D772FE0C5EFFE6FF0EEE5DFC7907A4 (URL)
Figure: 10.5281/zenodo.270389 (DOI)
Figure: 10.5281/zenodo.270390 (DOI)

References

  • Ansorge, I.J. & Lutjeharms, J.R.E. (2003) Eddies originating at the South-West Indian Ridge. Journal of Marine Systems, 39, 1-18.
  • http://dx.doi.org/10.1016/S0924-7963(02)00243-9
  • Balushkin, A.V. (1976) A review of the "larseni" group of species of the genus Notothenia Rich. Journal of Ichthyology, 16 (1), 1-12.
  • Balushkin, A.V. (1991) Review of green notothenias, Gobionotothen, Balushkin (Nototheniidae) of the Antarctic and sub- Antarctic. Journal of Ichthyology, 31 (4), 531-542.
  • Balushkin, A.V. (2000) Morphology, classification and evolution of notothenioid fishes of the Southern Ocaen (Notothenioidei, Perciformes). Journal of Ichthyology, 40 (S1), S74-S109.
  • Chow, S. & Hazama, K. (1998) Universal PCR primers for S7 ribosomal protein gene introns in fish. Molecular Ecology, 7, 1247-1263.
  • Chown, S.L. & Froneman, P.W. (2008) The Prince Edward Islands in a global context. In: Chown, S.L. & Froneman, P.W. (Eds.), The Prince Edward Islands: Land-sea interactions in a changing ecosystem. Sun Press, Stellenbosch, pp. 1-16.
  • Clarke, A., Barne, D.K.A. & Hodgson, D.A. (2005) How isolated is Antarctica? Trends in Ecology and Evolution, 20 (1), 1-3. http://dx.doi.org/10.1016/j.tree.2004.10.004
  • Damerau, M., Salzburger, W. & Hanel, R. (2014) Population genetic structure of Lepidonotothen larseni revisited: cyb and microsatellites suggest limited connectivity in the Southern Ocean. Marine Ecology Progress Series, 517, 251-263. http://dx.doi.org/10.3354/meps11061
  • Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods, 9 (8), 772.
  • http://dx.doi.org/10.1038/nmeth.2109
  • DeWitt, H.H. (1966) Revision of the Antarctic and southern genus Notothenia (Pisces, Nototheniidae). Unpublished Ph.D. Dissertation, Stanford University, Stanford, CA, xiii + 469 pp.
  • DeWitt, H.H., Heemstra, P.C. & Gon, O. (1990) Nototheniidae. In: Gon, O. & Heemstra, P.C. (Eds.), Fishes of the Southern Ocean. J.L.B. Smith Institute of Ichthyology, Grahamstown, pp. 279-331.
  • Duhamel, G., Hureau, J.-C & Ozouf-Costaz, C. (1983) Ecological survey of the notothenioid fishes in the Southern Ocean from Bouvet to Kerguelen Islands. In: Nemoto, T. & Matsuda, T. (Eds), Proceedings of the biomass colloquium in 1982, Memoirs of national institute of polar research, Special Issue 27, pp. 176-182. [Tokyo]
  • Duhamel, G., Hulley, P.-A., Causse, R., Koubbi, P., Vacchi, M., Pruvost, P., Vigetta, S., Irisson, J.-O., Mormede, S., Belchier, M., Dettai, A., Detrich, H.W., Gutt, J., Jones, C.D., Kock, K.-H., Lopez Abellan, L.J. & Van de Putte, A.P. (2014) Biogeographic patterns of fish. In: De Broyer, C. & Koubbi, P. (Chief Eds.), Biogeographic Atlas of the Southern Ocean. Scientific Committee on Antarctic Research, Cambridge, pp. 328-362.
  • Folmer, O., Black, M., Hoeh, W., Lutz, R. & Vrijenhoek, R. (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3 (5), 294-299.
  • Gon, O. & Klages, N. (1988) The marine fish fauna of the sub-Antarctic Prince Edward Islands. South African Journal of Antarctic Research, 18 (2), 32-54.
  • Gonzalez-Wevar, C.A., Chown, S.L., Morley, S., Coria, N., Saucede, T. & Poulin, E. (2014) Out of Antarctica: quaternary colonization of sub-Antarctic Marion Island by the limpet genus Nacella (Patellogastropoda: Nacellidae). Polar Biology, 29 November 2014, 1-13. [published online]
  • http://dx.doi.org/10.1007/s00300-014-1620-9
  • Hebert, P.D.N., Cywinska, A., Ball, S.L. & Dewaard, J.R. (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society B: Biological Sciences, 270, 313-322.
  • http://dx.doi.org/10.1098/rspb.2002.2218
  • Hune, M., Gonzalez-Wevar, C., Poulin, E., Mansilla,A., Fernandez, D.A. & Barrera-Oro, E. (2015) Low level of genetic divergence between Harpagifer fish species (Perciformes: Notothenioidei) suggests a Quaternary colonization of Patagonia from the Antarctic Peninsula. Polar Biology, 38 (5), 607-617.
  • http://dx.doi.org/10.1007/s00300-014-1623-6
  • Jones, C.D., Anderson, M.E., Balushkin, A.V., Duhamel, G., Eakin, R.R., Eastman, J.T., Kuhn, K.L., Lecointre, G., Near, T.J., North, A.W., Stein, D.L., Vacchi, M. & Detrich, H.W. III. (2008) Diversity, relative abundance, new locality records and population structure of the Antarctic demersal fishes from the northern Scotia Arc islands and Bouvetoya. Polar Biology, 31, 1481-1497.
  • http://dx.doi.org/10.1007/s00300-008-0489-x
  • Kellermann, A.K. (1989) The larval fish community in the zone of seasonal pack-ice cover and its seasonal and inter-annual variability. Archiv fur Fischereiwissenschaft, 39 (Beih 1), 81-109.
  • Kemp, A.E.S., Grigorov, I., Pearce, R.B. & Naveira, G.A.C. (2010) Migration of the Antarctic Polar Front through the mid- Pleistocene transition: evidence and climatic implications. Quaternary Science Reviews, 29, 1993-2009. http://dx.doi.org/10.1016/j.quascirev.2010.04.027
  • Kimura, M. (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 11-120.
  • http://dx.doi.org/10.1007/BF01731581
  • Kocher, T.D., Conroy, J.A., Stauffer, J.R. & Luckwood, S.F. (1995) Evolution of NADH dehydrogenase subunit 2 in East African Cichlid fish. Molecular Phylogenetics and Evolution, 4 (4), 420-432.
  • http://dx.doi.org/10.1006/mpev.1995.1039
  • Langenbuch, M. & Portner, H.O. (2003) Energy budget of hepatocytes from Antarctic fish (Pachycara brachycephalum and Lepidonotothen kempi) as afunction of ambient CO2: pH-dependent limitations of cellular protein biosynthesis? Journal of Experimental Biology, 206, 3895-3903.
  • http://dx.doi.org/10.1242/jeb.00620
  • Larkin, M.A., Blackshields, G., Brown, N.P., Chenna, R., McGettigan, P.A., McWilliam, H., Valentin, F., Wallace, I.M., Wilm, A., Lopez, R., Thompson, J.D., Gibson, T.J. & Higgins, D.G. (2007) Clustal W and Clustal X version 2.0. Bioinformatics, 23, 2947-2948.
  • http://dx.doi.org/10.1093/bioinformatics/btm404
  • Librado, P. & Rozas, J. (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25 (11), 1451-1452.
  • http://dx.doi.org/10.1093/bioinformatics/btp187
  • McDougall, I., Verwoerd, W. & Chevallier, L. (2001) K-AR geochronology of Marion Island, Southern Ocean. Geological Magazine, 138 (1), 1-17.
  • http://dx.doi.org/10.1017/S0016756801005039
  • Miya, T., Gon, O., Mwale, M. & Cheng, C.-H.C. (2015) Multiple independent reduction or loss of antifreeze trait in low Antarctic and sub-Antarctic notothenioid fishes. Antarctic Science.
  • http://dx.doi.org/10.1017/s0954102015000413
  • Near, T.J. & Cheng, C.-H.C. (2008) Phylogenetics of notothenioid fishes (Teleostei: Acanthomorpha): Inference from mitochondrial and nuclear gene sequences. Molecular Phylogenetic and Evolution, 47, 832-840. http://dx.doi.org/10.1016/j.ympev.2007.11.027
  • Near, T.J., Dornburg, A., Kuhn, K.L., Eastman, J.T., Pennington, J.N., Patarnello, T., Zane, L., Fenandez, D.A. & Jones, C.D. (2012) Proceedings of the National Academy of Science of the United States of America, 109 (9), 3434-3439. http://dx.doi.org/10.1073/pnas.1115169109
  • North, A.W. (2001) Early life history strategies of notothenioids at South Georgia. Journal of Fish Biology, 58, 496-505. http://dx.doi.org/10.1111/j.1095-8649.2001.tb02268.x
  • Permitin, Y.Y. & Sazonov, Y.I. (1974) The systematics of Notothenia squamifrons Gunther and related species. Journal of Ichthyology, 14 (4), 503-514.
  • Petrov, A.F. (2011) New data on depths inhabited by striped-eyed rock cod Lepidonotothen kempi (Norman) (Nototheniidae) off Bouvet Island. Journal of Ichthyology, 51 (8), 683-685.
  • http://dx.doi.org/10.1134/S0032945211050146
  • Poulin, E., Gonzalez-Wevar, C., Diaz, A., Gerard, K. & Hune, M. (2014) Divergence between Antarctic and South American marine invertebrates: what molecules tell us about the Scotia Arc geodynamics and the intensification of the Antarctic circumpolar current. Global and Planetary Change, 123, 392-399.
  • http://dx.doi.org/10.1016/j.gloplacha.2014.07.017
  • Rock, J., Costa, F.O., Walker, D.I., North, A.W., Hutchinson, W.F. & Carvalho, G.R. (2008) DNA barcodes of fish of the Scottia Sea, Antarctica indicate priority groups for taxonomic and systematics focus. Antarctic Science, 20, 253-262. http://dx.doi.org/10.1017/S0954102008001120
  • Schneppenheim, R., Kock, K.-H., Duhamel, G. & Janssen, G. (1994) On the taxonomy of the Lepidonotothen squamifrons group (Pisces, Perciformes, Notothenioidei). Archive of Fishery and Marine Research, 42, 137-148.
  • Simmons, M.P. & Ochoterena, H. (2000) Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology, 49 (2), 369-381.
  • http://dx.doi.org/10.1093/sysbio/49.2.369
  • Smith, P.J., Steinke, D., Dettai, A., McMillan, P., Welsford, D., Stewart, A. & Ward, R.D. (2012) DNA barcodes and species identifications in Ross Sea and Southern Ocean fishes. Polar Biology, 35, 1297-1310. http://dx.doi.org/10.1007/s00300-012-1173-8
  • Swofford, D.L. (2002) PAUP* v4: Phylogenetic analysis using parsimony (and other methods). Sinauer Associates, Sunderland, Massachusetts.
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013) MEGA6: Molecular evolutionary genetics analysis. Molecular Biology and Evolution, 30 (12), 2725-2729.
  • http://dx.doi.org/10.1093/molbev/mst197
  • Wohrmann, A.P.A. (1996) Antifreeze glycopeptides and peptides in Antarctic fish species from the Weddell Sea and the Lazarev Sea. Marine Ecology Progress Series, 130, 47-59.
  • http://dx.doi.org/10.3354/meps130047
  • Voskonoinikova, O.S. & Kellermann, A. (1997) The osteological development of nine species of Nototheniidae (Perciformes: Notothenioidei). Cybium, 21 (3), 231-264.