States of genome assembly supporting data for complete genome assembly of clinical multidrug resistant Bacteroides fragilis isolates enables comprehensive identification of antimicrobial resistance genes and plasmids.

Assemblies for each isolate and assembly stage is in .gfa and .fasta format.

the best SPAdes assembly is also included in the .zip files.

1) Unicycler with illumina data and Nanopore data from the first sequencing run, filtered with FiltLong.
2) Unicycler with illumina data and Nanopore data from the first sequencing run, filtered with FiltLong and error corrected with Canu
3) Unicycler with illumina data and Nanopore data from the first and second sequencing run, filtered with FiltLong.
4) manual finshing of assembly 3. 
Methods are described in the paper and at the github repository (https://github.com/thsyd/bfassembly)