Homologous membrane protein structures (HOMEP) version 3
Description
Homologous membrane protein structures (HOMEP) version 3 (created 2013)
An updated version of v2 10.5281/zenodo.2646539 and v1: 10.5281/zenodo.2646534
Table 1 = Alpha-helical membrane protein structures in the HOMEP3 data set (2013), listed by family
From Stamm M, Forrest LR, Proteins 2015 (Supplementary Table 1): https://www.ncbi.nlm.nih.gov/pubmed/26178143
Contains the following columns:
Protein family, Protein databank identifier, Chain identifier, Name, Source organism, Resolution (Å)
Table 2 = Beta-barrel membrane protein structures in the HOMEP3 data set (2013), listed by family
From Stamm M, Forrest LR, Proteins 2015 (Supplementary Table 2)
Contains the following columns:
Protein family, Protein databank identifier, Chain identifier, Name, Source organism, Resolution (Å)
HOMEP3_pairs_alpha.txt
List of all pairs of protein structure chains of alpha-helical proteins
HOMEP3_pairs_beta.txt
List of all pairs of protein structure chains of beta-barrel proteins
HOMEP3_pdbs.tar.gz
All pdb files for individual chains in both alpha-helical and beta-barrel subsets
Notes
Files
HOMEP3_pairs_alpha.txt
Files
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Additional details
Related works
- Is supplement to
- 10.1002/prot.24857 (DOI)
References
- Stamm M, Forrest LR. Structure alignment of membrane proteins: Accuracy of available tools and a consensus strategy. Proteins. 2015 Sep;83(9):1720-32. doi: 10.1002/prot.24857. Epub 2015 Aug 1. Erratum in: Proteins. 2016 Sep;84(9):1333. PubMed PMID: 26178143; PubMed Central PMCID: PMC4545697.