Published January 28, 2017
| Version openmp-cluster_computing
Software
Open
nathanweeks/htslib-openmp: openmp-cluster_computing
Authors/Creators
- pd3
- John Marshall
- James Bonfield1
- Heng Li2
- daviesrob
- Nathan T. Weeks3
- Martin Pollard1
- Shane McCarthy1
- Isaac Turner4
- Joshua C. Randall1
- Mauricio Carneiro2
- jmthibault79
- dkj
- Adrian Tan5
- reinders
- kirkmcclure
- Jared Simpson
- Jennifer Liddle6
- Devon Ryan7
- ryan10X
- Matt Shirley8
- Kevin Squire9
- Karthik Gururaj
- Joël Spaltenstein10
- Jason Piper
- droazen
- Cristina Yenyxe Gonzalez Garcia11
- Artem Tarasov
- Andre Masella12
- Afif Elghraoui13
- 1. Wellcome Trust Sanger Institute
- 2. Broad Institute
- 3. USDA-ARS, Iowa State University
- 4. University of Oxford
- 5. University of Michigan
- 6. @wtsi-npg @samtools
- 7. Max Planck Institute of Immunobiology and Epigenetics
- 8. @novartis, ex @JHUCCG
- 9. SecondSpectrum
- 10. Spaltenstein Natural Image
- 11. European Bioinformatics Institute
- 12. Ontario Institute for Cancer Research
- 13. San Diego State University
Description
This is a version of HTSlib (https://github.com/samtools/htslib) with OpenMP optimizations described in the manuscript:
Nathan T. Weeks and Glenn R. Luecke, "Optimization of SAMtools Sorting
Using OpenMP Tasks". Cluster Computing. (submitted)
Files
nathanweeks/htslib-openmp-openmp-cluster_computing.zip
Files
(1.2 MB)
| Name | Size | Download all |
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md5:9a144ae87aa1e118416a8bb1e89cd51f
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Additional details
Related works
- Is supplement to
- https://github.com/nathanweeks/htslib-openmp/tree/openmp-cluster_computing (URL)