RNA-sequencing analyses
Published March 1, 2019 | Version v1
Journal article Open

Snakemake RNA seq pipeline to quantify human gene and transposable element expression

Authors/Creators

  • 1. University of Amsterdam

Description

This pipeline performs trimming and mapping of RNA-Seq Illumina paired-end reads on the human genome. It computes raw counts for genes and repeats and output bigwig coverage files for each sample.

 

Files

README.md

Files (17.7 kB)

Name Size Download all
md5:ab0564657f6132bd75c038cb6c181f1e
2.4 kB Download
md5:47c93c67e1a7e458a4f2c65bb01cfc04
231 Bytes Download
md5:78897633664433d9d9db50e4c0ec6bca
2.0 kB Preview Download
md5:c76ce1e431b9cc54daa7d0dc15fc29e9
13.1 kB Download