shenwei356/seqkit: SeqKit v0.10.1

Changes

• SeqKit v0.10.1
  • seqkit fx2tab: new option -q/--avg-qual for outputting average read quality. #60
  • seqkit grep/locate: fix support of X when using -d/--degenerate. #61
  • seqkit translate:
    • new flag -M/--init-codon-as-M to translate initial codon at beginning to 'M'. #62
    • translates --- to - for aligned DNA/RNA, flag -X needed. #63
    • supports codons containing ambiguous bases, e.g., GGN->G, ATH->I. #64
    • new flag -l/--list-transl-table to show details of translate table N
    • new flag -l/--list-transl-table-with-amb-codons to show details of translate table N (including ambigugous codons)
  • seqkit split/split2, fix bug of ignoring -O when reading from stdin.

Please cite

W Shen, S Le, Y Li*, F Hu*. SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation. PLOS ONE. doi:10.1371/journal.pone.0163962.

Links

Tips

• run seqkit version to check update !!!
• run seqkit genautocomplete to update Bash completion !!!

OS Arch File, 中国镜像 Download Count Linux 32-bit seqkit_linux_386.tar.gz, <br/> 中国镜像 Linux 64-bit seqkit_linux_amd64.tar.gz, <br/> 中国镜像 OS X 32-bit seqkit_darwin_386.tar.gz, <br/> 中国镜像 OS X 64-bit seqkit_darwin_amd64.tar.gz, <br/> 中国镜像 Windows 32-bit seqkit_windows_386.exe.tar.gz, <br/> 中国镜像 Windows 64-bit seqkit_windows_amd64.exe.tar.gz, <br/> 中国镜像