Nanomaterial safety data integration with eNanoMapper database
Authors/Creators
- 1. Ideaconsult Ltd., Sofia, Bulgaria
- 2. University of Plovdiv, Bulgaria
- 3. Karolinska Institutet,Institute for Environmental Medicine, Stockholm, Sveden,
- 4. Institute of Molecular Biology – Bulgarian Academy of Sciences
- 5. German Federal Institute for Risk Assessment (BfR), Berlin, germany
Description
We present experience with integrating large sets of nanosafety data generated from past NanoSafety Cluster projects with the help of a substance data model (Figure 1), implemented by the eNanoMapper database software [1]. This data model is also successfully used to handle chemical substances and safety data from ECHA dossiers [2].
•While multiple structured import formats are supported (IUCLID, RDF, JSON), the nanosafety data from past and ongoing projects use custom spreadsheet templates, currently encompassing over 1000 Excel files. Import of Excel files is enabled by a configurable parser that maps the spreadsheet data via external configuration files. Multiple export formats are supported, including tab delimited files, RDF and ISA-JSON.
•The eNanoMapper ontology[3] is used for harmonisation of the terminology and as a synonym list for query expansion.
Files
NanoTox2018_Poster_IDEA.pdf
Files
(1.3 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:642c590f5d5eb9e5b7a36d4be40cf7cf
|
1.3 MB | Preview Download |
Additional details
Funding
References
- Jeliazkova, N.; Chomenidis, C.; Doganis, P.; Fadeel, B.; Grafström, R.; Hardy, B.; Hastings, J.; Hegi, M.; Jeliazkov, V.; Kochev, N.; Kohonen, P.; Munteanu, C. R.; Sarimveis, H.; Smeets, B.; Sopasakis, P.; Tsiliki, G.; Vorgrimmler, D.; Willighagen, E. Beilstein J. Nanotechnol. 2015, 6, 1609–1634.
- Jeliazkova, N.; Koch, V.; Li, Q.; Jensch, U.; Reigl, J. S.; Kreiling, R.; Georgiev, I.; Hubesch, B. Toxicol. Lett. 2016, 258, S114–S115.
- Hastings, J.; Jeliazkova, N.; Owen, G.; Tsiliki, G.; Munteanu, C. R.; Steinbeck, C.; Willighagen, E. J. Biomed. Semantics 2015, 6 (1), 10.