Published January 11, 2019 | Version 1.0.0
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Cellulose test MD dataset for analysis with Galaxy and BRIDGE


This coordinate and trajectory dataset is that of cellulase and octaose substrate in water. It has been derived from the 7CEL PDB structure of a fungal cellobiohydrolase. 

The original enzyme has been modified to revert the mutation at position 217 and to include disulfide bonds. The octaose substrate is an oligosaccharide consisting of 8 beta 1-4 linked glucose monomers.  The enzyme and substrate have been placed in a cubic TIP3P water box containing 0.15 M ions (NaCl).

The files includes are: 

  • cbh1test.pdb: the coordinates of the entire system (water, protein and substrate) in PDB format. 
  • cbh1test.dcd: a short MD trajectory (16 frames) in CHARMM DCD format.


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