Published January 19, 2017
| Version v1.14.0
Software
Open
broadinstitute/viral-ngs: v1.14.0
Authors/Creators
- 1. Broad Institute of MIT and Harvard
- 2. MIT
- 3. The Scripps Research Institute
- 4. DNAnexus
Description
A set of scripts and tools for the analysis of viral NGS data.
More detailed documentation can be found at http://viral-ngs.readthedocs.org/ This includes installation instructions, usage instructions for the command line tools, and usage of the pipeline infrastructure.
v1.14.0 Release Notes
New:
- read_utils.align_and_fix() now has an option--skipMarkDupes since samtools depth can segfault if if duplicate reads are marked
- reports.align_and_plot_coverage() can now use Novoalign as the aligner rather the default BWA mem
Fixed:
- align_rna memory raised to 36 GB in Snakemake pipeline
- metagenomics.coverage_lca() is now hardened to missing taxids
Changed/Updated:
- For align_rna, "sensitive" option is now disabled by default for BWA mem
- pytest 2.9.1 -> 3.0.5
Files
broadinstitute/viral-ngs-v1.14.0.zip
Files
(46.3 MB)
| Name | Size | Download all |
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md5:c33457b96968195ecbba54fa00f3fdfe
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46.3 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/broadinstitute/viral-ngs/tree/v1.14.0 (URL)