Published October 24, 2026
| Version v1
Software
Open
NPHIES FHIR Clinical Document Engine v1.0
Authors/Creators
Description
NPHIES FHIR Clinical Document Engine v1.0 — bilingual (Arabic/English) clinical NLP-to-FHIR pipeline that converts free-text clinical notes into NPHIES-aligned FHIR R4 resources for the Saudi healthcare ecosystem.
Pipeline:
- Clinical NER: BioBERT disease/chemical NER (EN), CamelBERT MSA NER + keyword fallback (AR)
- Entity normalization to NPHIES code systems: ICD-10, LOINC, RxNorm, SNOMED-CT
- FHIR R4 bundle generation: Patient, Condition, Encounter, Observation, MedicationRequest
Verified run: 4 bilingual cases, 37 entities, 25 FHIR R4 resources in one valid collection Bundle.
Companion dataset: BrainSAIT Providers Registry (BPR) v1.0 (DOI: 10.5281/zenodo.23608911)
Files
nphies_output/clinical_notes.json
Files
(59.2 kB)
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Additional details
Related works
- References
- 10.5281/zenodo.23608911 (DOI)
- 10.5281/zenodo.23604175 (DOI)