RNP-ContactBench archived predictions and protein-alignment inputs

Protein-alignment inputs and the coordinate-part index for the manuscript "Where protein–RNA contact recovery is lost under a fixed inspection budget".

protein_sequence_search_msa.tar is stored as 74 parts named protein_sequence_search_msa.tar.part.NNN. Concatenate them in order. The reassembled file has 617748480 bytes and SHA-256 fddae36f83d8d21e2efeedfa8d4d619bdc12103b84a4d469934abf796c043c44. Member paths and checksums are in protein_sequence_search_msa_manifest.csv. Scoring does not read this archive.

stored_sample_mmcifs.tar contains 8,570 mmCIF files and is stored as parts on companion records. Reassembled size and checksum are in REASSEMBLE_stored_sample_mmcifs.md. Member paths are in stored_sample_mmcif_manifest.csv. Chai-1 paths include the trunk directory.

• parts 000-095, https://doi.org/10.5281/zenodo.23530958
• parts 096-191, https://doi.org/10.5281/zenodo.23530960
• parts 192-287, https://doi.org/10.5281/zenodo.23530962
• parts 288-383, https://doi.org/10.5281/zenodo.23530966
• parts 384-476, https://doi.org/10.5281/zenodo.23530971

Checkpoints: https://doi.org/10.5281/zenodo.21822700. Scripts: https://github.com/Xindi-Wang1004/pSMP-rnp-bench.

Parts by record: parts 000-095 at https://doi.org/10.5281/zenodo.23530958; parts 096-191 at https://doi.org/10.5281/zenodo.23530960; parts 192-287 at https://doi.org/10.5281/zenodo.23530962; parts 288-383 at https://doi.org/10.5281/zenodo.23530966; parts 384-476 at https://doi.org/10.5281/zenodo.23530971. Protein-alignment archive and the member manifest: https://doi.org/10.5281/zenodo.23522971.