Precomputed results for DOST reproducibility

Precomputed results for DOST (Distance-preserving Optimization for Spatial Transcriptomics), a method for identifying spatial domains in spatial transcriptomics data. This record accompanies the DOST code (see Related works) and the DOST paper.

results.zip contains the outputs of the scripts in the reproducibility/ directory of the code repository, for DOST and for the baseline methods BANKSY, BASS, DR.SC, GraphST, STAGATE, SpaGCN, stCluster and ADEPT. These are the files read by the figure scripts in reproducibility/figures/.

To use the files, unzip results.zip, set dir.output in the figure scripts to the unzipped folder, and run the scripts as described in reproducibility/figures/README.md in the code repository.

The datasets are not included. They are publicly available from the BenchmarkST Zenodo records (DLPFC12, BC, mMAMP and mHypothalamus) and from 10x Genomics (Xenium Human Breast); see reproducibility/DOST/README.md in the code repository.