Published October 16, 2026
| Version Optimus_v9.3.0
Software
Open
github.com/broadinstitute/warp/scANVI
Authors/Creators
Description
Pipeline for cell type label transfer using SCVI and SCANVI models. Integrates single-cell RNA (GEX) and (optionally) ATAC data with an annotated reference to transfer cell type labels via semi-supervised deep generative models. When no ATAC h5ad is provided, the pipeline auto-detects GEX-only mode and trains/annotates from the reference atlas using GEX and reference alone.
Files
github.com-broadinstitute-warp-scANVI_Optimus_v9.3.0.zip
Additional details
Related works
- Is identical to
- https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.23427699 (URL)
- https://dockstore.org/workflows/github.com/broadinstitute/warp/scANVI:Optimus_v9.3.0 (URL)
- https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fbroadinstitute%2Fwarp%2FscANVI/versions/Optimus_v9.3.0/PLAIN-WDL/descriptor/scANVI.wdl (URL)