Published October 11, 2026 | Version v12
Dataset Open

PEMA databases and datasets

Authors/Creators

Description

In this repo, the crest4 and the RDPClassifier oriented databases used in PEMA will be versioned. We list the provided databases per marker gene:

Marker Gene crest4 Databases RDPClassifier Databases Version
COI midori2 (darn processed) -- this is now automatically retrieved from `crest4` midori1, midori2  
16S Silva128, Silvamod138pr2 (SILVA v138 + PR2 v4.13) —  
18S Silvamod138pr2 —  
12S — 12SvertebrateClassifier  v2.0.0-ref
ITS Unite v10.0 (2025-02-19) —  

 

We also keep a copy of the datasets for the sanity checks.

Files

Files (1.6 GB)

Name Size
md5:68161d703d68b93599701dfab081aeb6
30.1 MB Download
md5:c7a872e3c86f7709a6e4979018d4d198
419.5 MB Download
md5:bc5d850c8e4b120cf15e764ff7442ce4
781.0 MB Download
md5:c519b99bd16943b3a0ddec8f24425f53
403.8 MB Download
md5:572c551b22dd665a71aa07240c383d2e
11.7 MB Download

Additional details

Software

Repository URL
https://github.com/hariszaf/pema/
Development Status
Active