Published October 5, 2026
| Version v1
Dataset
Open
ProteoBench entrapment DIA — MaxQuant 2.8.1.0 related output tables (mirror)
Description
The four related MaxQuant 2.8.1.0 (MaxDIA) output tables of one search of the ProteoBench entrapment module — evidence.txt, peptides.txt, modificationSpecificPeptides.txt and proteinGroups.txt — together with the mqpar.xml MaxQuant wrote to the txt folder and the runs' sdrf.tsv. Three Astral DIA runs (LFQ_Astral_DIA_15min_50ng_Human_01–03) searched against ProteoBenchFASTA_Entrapment_Human_with_contaminants_entrapment_pep.fasta. The tables share MaxQuant's ID columns (Evidence IDs, Peptide IDs, Mod. peptide IDs, Protein group IDs), so the peptide, peptidoform and protein levels join to the ion level. Deposited as a checksummed, gzip-compressed mirror so that multi-table conversion tests of APB (AnnData Proteomics Bridge) download a stable copy. 6 files, 136 MB uncompressed; manifest.tsv carries sizes, MD5 and SHA-256. See DESCRIPTION.md in this record.
Notes
Verbatim mirror (gzip only) of MaxQuant output produced by the ProteoBench team for the entrapment module; not an official ProteoBench release. On the producers' request this record will be amended or withdrawn.
Files
DESCRIPTION.md
Files
(32.1 MB)
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md5:b2506d94227f11fbdc110581ef14382a
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md5:371b4ef1d7d275858d43dabd8d4e0e6f
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944 Bytes | Download |
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md5:2eadddfd126779785af05ffc541f5c76
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3.6 MB | Download |
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md5:aa96ed8ae1646e9c97100a68c6c76bc8
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md5:8377b90fc6519d30a52adaf94cec577d
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md5:59a2a75f78f744c9ecf067fe05395877
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2.9 MB | Download |
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md5:d9e41e54586773ba34898afcc5b1e3e2
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467 Bytes | Download |
Additional details
Related works
- Is derived from
- Software: https://github.com/Proteobench/ProteoBench (URL)
- Is supplement to
- Software: https://github.com/anndata-omics-bridge/apb2 (URL)