karrarm-bit/VISA-sRNA-CLASH-Network: VISA sRNA–mRNA Regulatory Network — Reproducibility Release v1.0.1

This release provides the reproducibility package accompanying the VISA sRNA–mRNA regulatory network study in Staphylococcus aureus. It contains the organized R scripts used for data preparation, RNA-seq analysis, RNase III-CLASH processing and analysis, evidence integration, Term-seq/3′UTR assessment, IntaRNA analysis, and generation of manuscript figures and tables. The repository is organized according to the computational workflow used in the study.