Synthetic Population for Virginia, US (ver. 2.4.0)
- 1. Biocomplexity Institute and Initiative, University of Virginia
Description
The synthetic population for the state of Virginia is constructed to be statistically indistinguishable from the real population at the spatial resolution of a US block group as measured by the US Census on selected demographic variables, which in this case are age (AGEP), household income (HINCP), household size (NP), race (RAC1P) and hispanic (HISP). The population includes people and households with demographic characteristics along with residential locations and general activity locations at parcel-level resolution and accuracy. All individuals are assigned activity sequences and activity locations through statistical matching methods. Finally, a contact network is constructed. The precise way in which this is done depends on the intended scenario. Here the target application is epidemic spread of influenza-like diseases, and the construction of the network is done at each location through a modified Erdos-Renyi random graph.
About this Zenodo mirror: this record mirrors the synthetic population for Virginia originally deposited in the UVA Dataverse. It is republished here to provide a stable, programmatically accessible source for the PhyloGeographic Analysis Similars (PhyloGAS) benchmarking framework, which consumes these files as its digital twin layer. The data are unmodified.
Technical info
Intended use: within PhyloGAS these files supply the demographic and contact structure underlying simulated outbreaks. The persontrait, person, household and residence_locations files are joined into a single demographics table that is attached as metadata to synthetic viral genomes, so that sampling strategies can be evaluated against realistic demographic and geographic structure. The EpiHiper persontrait and contact network files are the inputs required to run the agent-based model itself.
Related: the EpiHiper transmission networks generated from these populations are published separately at 10.5281/zenodo.23067670. The PhyloGAS software is at github.com/NSSAC/PhyloGAS.
Files
activity_types.csv
Files
(2.2 GB)
| Name | Size | |
|---|---|---|
|
md5:98261939a2748699e9771e4c65b63701
|
104 Bytes | Preview Download |
|
md5:cf835bbb5dcd9b87ad3ee3efe17a1336
|
533.7 kB | Preview Download |
|
md5:e27b26f73066b508330176a5d736b3a7
|
120.8 MB | Download |
|
md5:14bfb2877c899e8bce54989b71f0efc6
|
4.5 MB | Download |
|
md5:975f856e6f44f4e37345ebeaf470c253
|
951.3 MB | Download |
|
md5:dc7aa659ca1512c2afc0c81eed2df103
|
21.2 MB | Download |
|
md5:ce93be5e50b8c70b08d0f51cbd2b3249
|
181.2 MB | Download |
|
md5:7869de54a998cd0f890ddf62842807e3
|
3.1 MB | Download |
|
md5:9eea2e5dfc15711b7d5426d73048dd21
|
26.7 MB | Download |
|
md5:13bcf3726b4b2d5ec23b5de5593ba5d2
|
26.7 MB | Download |
|
md5:b8cb3b2e8b455f8657706dfcf007e31c
|
361.6 MB | Download |
|
md5:2c221b26e04471af959f50b4b747ddc8
|
455.2 MB | Download |
|
md5:cab93db949662cfa6789e39f58d583fb
|
34.5 MB | Download |
Additional details
Related works
- Cites
- Journal article: 10.1093/pnasnexus/pgae557 (DOI)
- Conference paper: 10.1109/TPS-ISA58951.2023.00013 (DOI)
- Is supplement to
- Dataset: 10.5281/zenodo.23067670 (DOI)
- Software: https://github.com/NSSAC/PhyloGAS (URL)