rendeirolab/wsidata: v0.12.0

What's Changed

• fix: read big OpenSlide regions in OpenSlide's own 4096 px chunks by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/72
• fix: fastslide reader reads after detach and pads regions past the edge by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/73
• fix: pickle readers and tile datasets for spawned DataLoader workers by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/74
• feat: deprecate color_norm and ColorNormalizer, to be removed in 0.13.0 by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/75
• fix: keep the CPU torch index out of git installs of wsidata by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/76
• docs: image_size resizes tiles, and is ignored with a TileSpec by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/77
• refactor: remove the zarr v2 reader store, unreachable with spatialdata's zarr>=3 by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/78
• fix: open_wsi passes extra keyword arguments to the reader by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/79
• fix: keep set_mpp and set_bounds values when a store is reopened by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/80
• fix: align features to tiles by tile_id; graph_data takes sparse arrays by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/81
• fix: agg_wsi and concat_feature_anndata find scene stores and name slides by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/82
• fix: store set_bounds in the slide properties attrs, not a table by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/84
• fix: pass sdata_formats, not the deprecated format, to SpatialData.write by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/83
• fix: to_datatree reads exact level pixels and survives pickling by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/87
• fix: require spatialdata>=0.7.3 to write images with ome-zarr>=0.14 by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/86
• fix: refuse to overwrite a store that lazily loaded elements read from by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/85
• fix: open_wsi keeps slides out of each other's stores by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/88
• fix: write() falls back to the path when the WSIData has no store by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/89
• fix: safer overwrites of a store, and support for anndata 0.13 and pandas 3 by @Mr-Milk in https://github.com/rendeirolab/wsidata/pull/90

Full Changelog: https://github.com/rendeirolab/wsidata/compare/v0.11.1...v0.12.0