Published January 3, 2017
| Version v1
Journal article
Open
Biased gene conversion drives codon usage in human and precludes selection on translation efficiency
Authors/Creators
- 1. 1 Laboratoire de Biométrie et Biologie Evolutive, Université de Lyon, Université Claude Bernard, CNRS UMR 5558, 43 boulevard du 11 novembre 1918, F-69100, Villeurbanne, France
- 2. 2 Laboratory of Biology and Modelling of the Cell, Université de Lyon, Université Claude Bernard, CNRS UMR 5239, INSERM U1210, 46 allée d'Italie, F-69007, Lyon, France
Description
This document provides the data (codon usage, base composition, recombination, expression...) and the source code for the figures compiled for the study realized by Pouyet F, Mouchiroud D, Duret L and Semon M.
data_HumanCodon Usage.zip is a compressed folder that contains useful data for the paper that is information on base composition, intragenic recombination rate and expression levels at several cellular stages or tissues for GO terms and for individuals human genes but also a perl script to select canonical transcript. Useful README files are available in this folder for more details.
fig_HumanCodonUsage.zip is a compressed folder that contains the figures of the paper in .png format as well as the R source code to produce them
Files
data_HumanCodonUsage.zip
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Additional details
References
- Pouyet et al (2017) Biased gene conversion drives codon usage in human and precludes selection on translation efficiency bioarxiv doi.org/10.1101/086447