A national baseline for methane sink habitats and methanotroph diversity
Authors/Creators
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1.
Aalborg University
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2.
UiT The Arctic University of Norway
Description
Zenodo repository hosting files linked to the paper "A national baseline for methane sink habitats and methanotroph diversity"
This includes GraftM packages for pmoA and mmoX, output for marker-gene quantification of the Microflora Danica metagenomes, metabolic annotation files of recovered MAGs and acessory files for analysis and plotting (e.g. phylogenomic trees and sylph quantification dataframes).
Github hosting code, supplementary files, and GraftM packages can be found at https://github.com/KalinkaKnudsen/MFD_Methanotrophs_Denmark
For download of the Microflora Danica short-read metagenomes and short-read based MAGs from the paper The Microflora Danica atlas of Danish environmental microbiomes, see BioProject PRJNA1071982 and the associated Zenodo https://doi.org/10.5281/zenodo.17162544
For download of the Microflora Danica long-read MAGs from the paper Genome-resolved long-read sequencing expands known microbial diversity across terrestrial habitats, see BioProject ID: PRJEB58634 and the associated GitHub https://github.com/Serka-M/MFD-LR/tree/main.
For download of MAGs retrieved in this study, see BioProject ID: PRJEB104930
Files
DRAM_tidy.zip
Files
(136.8 MB)
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Additional details
Related works
- Is published in
- Publication: 10.64898/2026.02.02.703227 (DOI)
Software
- Repository URL
- https://doi.org/10.5281/zenodo.22705333
- Programming language
- R