Published December 13, 2018 | Version 1.1.1
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Convenient interface to inverse Ising (ConIII): A Python 3 package for solving Ising-type maximum entropy models

  • 1. Cornell University, Santa Fe Institute, Arizona State University
  • 2. Santa Fe Institute, Arizona State University

Description

ConIII (pronounced CON-ee) is an open-source Python project providing a simple interface to solving the pairwise and higher order Ising model and a base for extension to other maximum entropy models. We describe the maximum entropy problem and give an overview of the algorithms that are implemented as part of ConIII (\url{https://github.com/eltrompetero/coniii}) including Monte Carlo histogram, pseudolikelihood,  minimum probability flow, a regularized mean field method, and a cluster expansion method. Our goal is to make a variety of maximum entropy techniques accessible to those unfamiliar with the techniques and accelerate workflow for users.

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