README

Output of FreeSurfer recon-all run over the Mindboggle-101 brains in 2014. One archive per cohort or subject.

This is bulk derived data, provided so results can be inspected without rerunning the pipeline. It is regenerable from the Mindboggle-101 dataset (record 1) plus FreeSurfer.

Citation

101 labeled brain images and a consistent human cortical labeling protocol. Arno Klein, Jason Tourville. Frontiers in Brain Imaging Methods. 6:171 (2012). DOI: 10.3389/fnins.2012.00171

Contents

• HLN-12.zip
• MMRR-21.zip, MMRR-21-rescan.zip
• NKI-RS-22.zip
• NKI-TRT-20.zip
• OASIS-TRT-20.zip, OASIS-TRT-20-rescan.zip
• Afterthought-1.tar.gz
• Colin27-1.tar.gz
• MMRR-3T7T-2-1.tar.gz, MMRR-3T7T-2-2.tar.gz
• Twins-2-1.tar.gz, Twins-2-2.tar.gz
• OAS1_0368_MR1_fs5.1.tar.gz -- single OASIS subject, FreeSurfer 5.1
• 3893245.tar.gz -- single subject, numeric source identifier

The -rescan archives hold repeat scans of the same participants, used for test-retest reliability.

Each archive holds a standard FreeSurfer subject directory tree (surf/, label/, mri/, stats/). Data are distributed as archives rather than loose files because unpacking them would exceed Zenodo's 100-file-per-record limit many times over.

Software

FreeSurfer, as run in 2014 (OAS1_0368_MR1_fs5.1.tar.gz is from FreeSurfer 5.1). Exact versions are recorded inside the archives where the pipeline logged them.

License

CC BY 4.0. See LICENSE.

The Mindboggle-101 collection

Mindboggle-101 is published as multiple Zenodo records. They are split by license and by size.

Start with record 1. It contains the labeled brains, atlases and templates, and is the record to cite for most purposes. Record 2 is separated only because its license is more restrictive. Records 3-5 are bulk pipeline output, derived from record 1 and regenerable from it with the named software. All records share the citation above and are grouped in the Mindboggle-101 Zenodo community.

Provenance of the imaging data

The magnetic resonance images underlying Mindboggle-101 include data acquired by other projects. Please cite the originating project alongside the article above:

• Nathan Kline Institute (NKI)
• Open Access Series of Imaging Studies (OASIS)
• Multi-Modal Reproducibility Resource (Johns Hopkins / Kirby)
• Colin27 single-subject MNI template

See docs/subjects/subject_sources_Mindboggle101.txt in record 1 for the per-subject mapping.