Published August 18, 2026
| Version v1.1
Dataset
Open
ViralClust: A Nextflow pipeline to cluster viral sequences - raw data and results
Authors/Creators
-
1.
Friedrich Schiller University Jena
Description
This is the repository for all raw data and results of the publication:
Triebel, S., Lamkiewicz, K., Marz, M. Reducing haystacks to needles - ViralClust: A Nextflow pipeline to cluster viral sequences. bioRxiv (2026). https://www.biorxiv.org/content/10.64898/2026.01.30.702815v1
The files include:
- raw_data.tar.gz - raw sequences download from NCBI
- Clustering results using ViralClust
- Orthoebolavirus - orthoebolavirus_viralclust.tar.gz
- Hepacivirus hominis (HCV) - hcv_viralclust.tar.gz
- Orthoflavivirus - flavivirus_viralclust.tar.gz
- Flaviviridae - flaviviridae_viralclust.tar.gz
- Alphainfluenzavirus influenzae (formerly Influenza A virus, IAV) - iav_viralclust.tar.gz
- Monkeypox virus - mpox_viralclust.tar.gz
- iav_clustering_70-90.tar.gz - Number of clusters for IAV dataset with 70 - 90 % sequence similarity while clustering
Files
Files
(694.5 MB)
| Name | Size | |
|---|---|---|
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md5:f6692d573a9626f4fcbee7f13fbeeff2
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57.8 MB | Download |
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md5:92575b4c677116cde69c20400c8b1eab
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30.7 MB | Download |
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md5:da4446d1c9bf3aadc6a8c9aaed9d3233
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9.6 MB | Download |
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md5:7be3f3157a764b5d8ae6e2965040ddcd
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13.5 kB | Download |
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md5:f358f342e97f4c101038145c9fb73db9
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263.3 MB | Download |
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md5:e8f76bcbe92490fc068a09da5a81edef
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150.4 MB | Download |
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md5:b75af265d6875082d0d7beebfa2a36c5
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4.3 MB | Download |
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md5:8fc5fbc2957a8944d10c2add97ae9205
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178.3 MB | Download |
Additional details
Software
- Repository URL
- https://github.com/rnajena/viralclust
- Programming language
- Nextflow , Python