Published July 29, 2026 | Version 1.0

Deliverable D4.1: An enriched content based on clinical relation identification

  • 1. ROR icon Luxembourg Centre for Systems Biomedicine
  • 2. ROR icon University of Luxembourg

Description

A Pipeline for detecting biomedical relations and enriching supplementary data files that have been collected as part of the FAIRClinical project. The pipeline has been implemented based on systematic and rigorous benchmarking of Biomedical Relation Extraction in general. Consequently, the best models have been fine-tuned separately and in an aggregative manner to build a two-tier relation extraction pipeline.  

Files

FAIRClinical D4.1 - An Enriched Content Based on Clinical Relation Identification.pdf

Additional details

Funding

UK Research and Innovation
FAIRClinical EP/Y036395/1
Swiss National Science Foundation
FAIRClinical 20CH21_217525
Agence Nationale de la Recherche
FAIRClinical ANR-23-CHRO-0008-01
Fonds National de la Recherche
FAIRClinical INTER/CHIST23/17882238/FAIRClinical

Software

Repository URL
https://github.com/Basel-Alshaikhdeeb/medre-bench
Programming language
Python
Development Status
Active