Published July 2, 2026
| Version v0.8.0
Software
Open
scverse/spatialdata: v0.8.0
Authors/Creators
- LucaMarconato
- Giovanni Palla
- Wouter-Michiel Vierdag1
- Kevin Yamauchi2
- Isaac Virshup3
- Quentin Blampey4
- aeisenbarth
- Tim Treis
- Arne Defauw
- Lukas Heumos5
- Benjamin Rombaut
- Mark Keller
- Selman Özleyen
- Ilan Gold6
- Jonas Paul Flor
- Tong LI7
- Sri Varra8
- Sonja-Stockhaus
- Philipp A.9
- Pariksheet Nanda
- Nick ODell
- Mikaela Koutrouli10
- Max Hargreaves10
- Matthias Meyer-Bender11
- Marvin Albert12
- Martin Helm
- LiudengZhang13
- LLehner
- Jan Lukas Rinker
- 1. European Molecular Biology Laboratory
- 2. @image-coop
- 3. CZI
- 4. Cure51 and Gustave Roussy Institute
- 5. @nvidia @scverse @theislab
- 6. Helmholtz Zentrum
- 7. Wellcome Sanger Institute
- 8. @czbiohub-sf @mehta-lab
- 9. @theislab
- 10. Genentech
- 11. EMBL
- 12. ETH Zurich
- 13. MD Anderson Cancer Center
Description
<!-- Release notes generated using configuration in .github/release.yml at main -->
What's Changed
Added
- Add/pixi tasks and Claude Skills for code profiling by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1097
- Support modifying/filtering labels elements via join operations by @selmanozleyen in https://github.com/scverse/spatialdata/pull/946
- Speedup for bounding_box_query by @MeyerBender in https://github.com/scverse/spatialdata/pull/1104
- Update tutorials; add R and JS links by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1133
- improves dataloader performance by @giovp in https://github.com/scverse/spatialdata/pull/687
- restore option to compress raster by @melonora in https://github.com/scverse/spatialdata/pull/944
Changed
- Refactor relational queries by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1131
- Migrate supported Python to 3.12, 3.13, 3.14 by @timtreis in https://github.com/scverse/spatialdata/pull/1151
- Fix: add validation to tables for relational queries by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1160
Fixed
- Fix write validation against empty transformations by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1118
- Fix adata layers None after anndata X unification by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1122
- Extra fixes adata layers None after anndata X unification by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1123
- Fix _search_for_backing_files_recursively() to support multifile parquet by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1127
- Fix points repr not showing length by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1128
- fix transform points with duplicate indices by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1129
New Contributors
- @MeyerBender made their first contribution in https://github.com/scverse/spatialdata/pull/1104
Full Changelog: https://github.com/scverse/spatialdata/compare/v0.7.3...v0.8.0
Files
scverse/spatialdata-v0.8.0.zip
Files
(447.3 kB)
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Additional details
Related works
- Is supplement to
- Software: https://github.com/scverse/spatialdata/tree/v0.8.0 (URL)
Software
- Repository URL
- https://github.com/scverse/spatialdata