Published December 19, 2016 | Version v1

POPC/Cholesterol (70:30) lipid membrane, 303K, Charmm36 force field, simulation files and 100 ns trajectory for openMM simulation engine v7

Authors/Creators

  • 1. IOCB AS CR

Description

All runs were performed with  openMM simulation engine v7 and CHARMM36 additive force field parameters obtained from MacKerell lab website (http://mackerell.umaryland.edu/charmm_ff.shtml). Conditions: T=303, 84 POPC and 36 Cholesterol molecules, 4800 tip3p waters, 100ns trajectory (preceded with equilibration). Charmm-format parameters were used.

Topology was built using VMD.

Built-in VdW switch was used.

Heavy Hydrogen atoms (4amu) and 4 fs time step used in this simulation.

These data were originally obtained for the nmrlipids.blospot.fi project.

Find more details at nmrlipids.blospot.fi and https://github.com/NMRLipids/nmrlipids.blogspot.fi

Files

Files (3.6 GB)

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