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Published June 25, 2026 | Version v1.0.0
Software Open

PoODLE: Phylogenomic Overview for Detection of Linkages for Epidemiologists

Description

Added

  • Initial release of PoODLE.
  • Core workflow implemented.
  • Documentation for usage, workflow, parameters, and outputs.
  • Containerized execution using Docker/Singularity.
  • Example samplesheet provided in assets/.

Notes

  • First stable release of the pipeline.

Notes

If you use this pipeline, please cite it as below.

Files

MDHHS-Bioinformatics/poodle-v1.0.0.zip

Files (17.5 MB)

Name Size
md5:d809012a28ea43a683a115e8b7b5988a
17.5 MB Preview Download

Additional details

Related works

Is supplement to
Software: https://github.com/MDHHS-Bioinformatics/poodle/tree/v1.0.0 (URL)

Software

Repository URL
https://github.com/MDHHS-Bioinformatics/poodle