Published June 24, 2026
| Version v2
Dataset
Open
Dataset for: Multi-objective VHH discovery through integrated high-throughput screening and AlphaFold3-guided structural prioritisation
Description
structures.tar.xz contains AlphaFold3 predictions output files for all predicted complexes.
combined_data.xlsx contains four sheets:
- all VHH sequences obtained from deep sequencing, annotated with the corresponding yeast display population;
- all VHH s for which AlphaFold 3 complex predictions were generated with one or more toxins. For each VHH-toxin pair, the table reports ipTM and pTM scores from the top-ranked model; entries are NA where a given VHH was not predicted against that toxin;
- all VHH s tested in the split-luciferase assay, including ipTM values for each target (αCbtx, αBgtx, cLNTx) and both raw and processed expression and binding measurements;
- split-luciferase binding and expression data for CamSol- and structural-evolution designed VHH variants, together with their corresponding wild-type sequences.
code.zip contains the analysis code used to produce the figures in the manuscript:
- notebooks/ — one Jupyter notebook per pipeline stage / figure group;
- SRC/ — standalone CLI script for AF3 output preprocessing;
- results/ — the input/output data each notebook reads/writes, so notebooks run end-to-end.
Files
code.zip
Files
(222.2 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:204e92e66ac7798d09361301702926c6
|
8.8 MB | Preview Download |
|
md5:b5cc93bf9c86facf1db3593d2c56ae71
|
1.2 MB | Download |
|
md5:b7e062ee6f7a8423538bf10333bacfd5
|
212.2 MB | Download |