Published June 23, 2026
| Version SlideSeq_v3.6.7
Software
Open
github.com/broadinstitute/warp/atac
Authors/Creators
Description
Processing for single-cell ATAC-seq data from the level of raw fastq reads. This is the first step of the multiome pipeline. ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) is a technique used in molecular biology to assess genome-wide chromatin accessibility. This pipeline processes 10x Genomics Multiome ATAC FASTQ files.
Files
github.com-broadinstitute-warp-atac_SlideSeq_v3.6.7.zip
Files
(23.1 kB)
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md5:f97577d22ea39b9b351e25c7fac0b45b
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Additional details
Related works
- Is identical to
- https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.20819947 (URL)
- https://dockstore.org/workflows/github.com/broadinstitute/warp/atac:SlideSeq_v3.6.7 (URL)
- https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fbroadinstitute%2Fwarp%2Fatac/versions/SlideSeq_v3.6.7/PLAIN-WDL/descriptor/atac.wdl (URL)