nf-core/fastquorum: 2.0.0

What's Changed

New Features

• Add non-random UMI correction via fgbio CorrectUmis, enabled by an optional umi_file column in the samplesheet https://github.com/nf-core/fastquorum/pull/145
• Add optional library_id, lane, and flowcell samplesheet columns and fix silent pre-merge output overwrites across lanes https://github.com/nf-core/fastquorum/pull/147

Enchancements

• Validate read structures with the nf-fgbio plugin https://github.com/nf-core/fastquorum/pull/123
• Add icon image https://github.com/nf-core/fastquorum/pull/128
• Update to nf-core/tools template version 3.3.2 https://github.com/nf-core/fastquorum/pull/131
• Ensure the PDF from CollectDuplexSeqMetrics is published https://github.com/nf-core/fastquorum/pull/138
• Fix Twist UMI docs from random to nonrandom https://github.com/nf-core/fastquorum/pull/141
• Update to nf-core/tools template version 3.5.2 with Nextflow strict syntax https://github.com/nf-core/fastquorum/pull/142
• Update to nf-core/tools template version 4.0.2 (raise minimum Nextflow to 25.10.4) https://github.com/nf-core/fastquorum/pull/150
• Update nf-core modules (bwa, fastqc, multiqc, samtools) https://github.com/nf-core/fastquorum/pull/151
• Add environment.yml, meta.yml, and container configs to local modules and recognize the apptainer container engine https://github.com/nf-core/fastquorum/pull/152

New Contributors

• @cehtolonen made their first contribution in https://github.com/nf-core/fastquorum/pull/128
• @clintval made their first contribution in https://github.com/nf-core/fastquorum/pull/138

Full Changelog: https://github.com/nf-core/fastquorum/compare/1.2.0...2.0.0