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Published June 23, 2026 | Version MultiSampleSmartSeq2SingleNucleus_v2.2.7
Software Open

github.com/broadinstitute/warp/SlideSeq

Authors/Creators

Description

Processes Slide-seq bead data: aligns reads with STARsolo, computes cell/gene/UMI metrics, and produces a sparse count matrix and h5ad output file

Files

github.com-broadinstitute-warp-SlideSeq_MultiSampleSmartSeq2SingleNucleus_v2.2.7.zip

Files (28.1 kB)

Additional details

Related works

Is identical to
https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.20815096 (URL)
https://dockstore.org/workflows/github.com/broadinstitute/warp/SlideSeq:MultiSampleSmartSeq2SingleNucleus_v2.2.7 (URL)
https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fbroadinstitute%2Fwarp%2FSlideSeq/versions/MultiSampleSmartSeq2SingleNucleus_v2.2.7/PLAIN-WDL/descriptor/SlideSeq.wdl (URL)