Published June 22, 2026
| Version 0.7.1dev
Software
Open
sanger-tol/ascc: 0.7.1dev - Prefect Testing
Authors/Creators
- 1. @sanger-tol
- 2. Wellcome Sanger
Description
0.7.1dev - Prefect Testing
This is a development version of ASCC 0.7.0 with a number of fixes based around getting ASCC working on the Sanger-ToL Prefect workflow manager.
Fixes to param evaluations which control process execution
Fixes to correct a [ConcurrentModificationException] stopping the use of FCS_ADAPTOR output
KMER_COUNTER has been replaced with COBIONTID_KMERCOUNTER to increase efficiency.
This required the addition of REFORMAT_NPY_2_CSV to generate the kmer table.
FCSGX_RUNGX has been updated to not depend on modulecmd instead, production profiles will instead default to a local installation of fcs_gx. Avoiding containerised options provided in the module.
Files
sanger-tol/ascc-0.7.1dev.zip
Files
(11.7 MB)
| Name | Size | Download all |
|---|---|---|
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md5:3951cf6de8eacb84af33c8eeb6bab3cc
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11.7 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/sanger-tol/ascc/tree/0.7.1dev (URL)
Software
- Repository URL
- https://github.com/sanger-tol/ascc