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Published June 21, 2026 | Version v0.2.0

Lacuna: Cryptic Binding Pocket Discovery via Conformational Ensemble Analysis

Authors/Creators

Description

Lacuna discovers cryptic binding pockets in proteins by generating a conformational ensemble, detecting pockets per conformer, clustering across the ensemble, and ranking by druggability with a continuous crypticity score. Validated on 20 cryptic-pocket targets (17/20, 85%), exceeding the CryptoSite benchmark. Uses an Anisotropic Network Model backend (CPU, ~1-8 s/protein) with optional Boltz-2 partial diffusion for harder targets.

Notes

If you use Lacuna in your research, please cite it as below.

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