TFActProfiler
Authors/Creators
Description
This Zenodo record contains the outputs of TFActProfiler and the source datasets used to create it: ChIP-Atlas, CollecTRI, and CellOracle.
TFActProfiler: Sugimoto, H., Tsuyuzaki, K., Zou, Z., Oki, S., Ohta, T., & Kawakami, E. (2025). Uncertainty-aware transcription factor activity and perturbation inference without additional training. bioRxiv, 2025-10.
ChIP-Atlas: Zou,Z., Ohta,T. and Oki,S. (2024) ChIP-Atlas 3.0: a data-mining suite to explore chromosome architecture together with large-scale regulome data. Nucleic Acids Res., 52, W45–W53.
CollecTRI: Müller-Dott,S., Tsirvouli,E., Vazquez,M., Ramirez Flores,R.O., Badia-I-Mompel,P., Fallegger,R., Türei,D., Lægreid,A. and Saez-Rodriguez,J. (2023) Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities. Nucleic Acids Res., 51, 10934–10949.
CellOracle: Kamimoto,K., Stringa,B., Hoffmann,C.M., Jindal,K., Solnica-Krezel,L. and Morris,S.A. (2023) Dissecting cell identity via network inference and in silico gene perturbation. Nature, 614, 742–751.
Files
CellOracle.csv
Files
(2.9 GB)
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md5:2e171c71fdb561a84eec69c333ac6a01
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Additional details
Software
- Repository URL
- https://github.com/HikaruSugimoto/tfactprofiler/tree/main