Published July 12, 2023
| Version v1
Journal article
Restricted
Diet selection, commonness, and rarity in a pair of smooth-toothed pocket gophers
Authors/Creators
Description
Brito, Brittany T, Bjornlie, Nichole L, Carling, Matthew D, Goheen, Jacob R (2023): Diet selection, commonness, and rarity in a pair of smooth-toothed pocket gophers. Journal of Mammalogy 104 (5): 915-928, DOI: 10.1093/jmammal/gyad052, URL: https://doi.org/10.1093/jmammal/gyad052
Files
Linked records
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:DA36FFB7FFB0F755FFF2E829FF965445
References
- Abdallah A., Tawfik J. 1969. The anatomy and histology of the kidney of sand rats (Psammomys obesus). Zeitschrift fur Versuchstierkunde 11:261-275.
- Ansley R.J., Abernethy R.H. 1984. Seed pretreatments and their effects on field establishment of spring-seeded Gardner's saltbush. Journal of Range Management 37:509-513.
- Benkman C.W. 1999. The selection mosaic and diversifying coevolution between crossbills and lodgepole pine. American Naturalist 153:S75-S91.
- Benson D.A., Karsch-Mizrachi I., Lipman D.J., Ostell J., Wheeler D.L. 2005. GenBank. Nucleic Acids Research 33:D34-D38.
- Best T.L. 1973. Ecological separation of three genera of pocket gophers (Geomyidae). Ecology 54:1311-1319.
- Biedma L., Calzada J., Godoy J.A., Roman J. 2020. Local habitat specialization as an evolutionary response to interspecific competition between two sympatric shrews. Journal of Mammalogy 101:80-91.
- Boag P.T., Grant P.R. 1984. The classical case of character release: Darwin's finches (Geospiza) on Isla Daphne Major, Galapagos. Biological Journal of the Linnean Society 22:243-287.
- Bolnick D.I., Yang L.H., Fordyce J.A., Davis J.M., Svanback R. 2002. Measuring individual-level resource specialization. Ecology 83:2936-2941.
- Borges L.R., Maestri R., Kubiak B.B., Galiano D., Fornel R., de Freitas T.R.O. 2017. The role of soil features in shaping the bite force and related skull and mandible morphology in the subterranean rodents of genus Ctenomys (Hystricognathi: Ctenomyidae). Journal of Zoology 301:108-117.
- Borstein S. 2019. dietr: diet estimated trophic levels. R package version 1.0. https://github.com/sborstein/dietr.
- Borzee A., Kim J.Y., Yikweon J. 2016. Asymmetric competition over calling sites in two closely related treefrog species. Scientific Reports 6:32569.
- Botts E.A., Erasmus B.R.N., Alexander G.J. 2013. Small range size and narrow niche breadth predict range contractions in South African frogs. Global Ecology and Biogeography 22:567-576.
- Brito B.T., Sanchez J.F. 2020. Tunnel diameter as a noninvasive method of detecting pocket gopher (Geomyidae) occupancy. Wildlife Society Bulletin 44:756-759.
- Brown J.H. 1984. On the relationship between abundance and distribution of species. The American Naturalist 124:255-279.
- Brown J.H., Fox B.J., Kelt D.A. 2000. Assembly rules: desert rodent communities are structured at scales from local to continental. The American Naturalist 156:314-321.
- Brown J.H., Munger J.C. 1985. Experimental manipulation of a desert rodent community: food addition and species removal. Ecology 66:1545-1563.
- Brown L.N., Hickman G.C. 1973. Tunnel system structure of the southeastern pocket gopher. Florida Scientist 36:97-103.
- Bull C.M. 1991. Ecology of parapatric distributions. Annual Review of Ecology and Systematics 22:19-36.
- Cacho N.I., Strauss S.Y. 2014. Occupation of bare habitats, an evolutionary precursor to soil specialization in plants. Proceedings of the National Academy of Sciences of the United States of America 111:15132-15137.
- Canfield R.H. 1941. Application of line interception method in sampling range vegetation. Journal of Forestry 39:388-394.
- Chan K., Boutin S., Hossie T.J., Krebs C.J., O'Donoghue M., Murray D.L. 2017. Improving the assessment of predation functional responses by considering alternate prey and predator interactions. Ecology 98:1787-1796.
- Chu B., Ye G., Yang S., Zhou F., Zhang F., Hua L. 2020. Effect of plateau zokor (Myospalax fontanierii) disturbance on plant community structure and soil properties in the eastern Qinghai-Tibet Plateau, China. Rangeland Ecology and Management 73:520-530.
- Davidson A.D., Detling J.K., Brown J.H. 2012. Ecological roles and conservation challenges of social, burrowing, herbivorous mammals in the world's grasslands. Frontiers in Ecology and the Environment 10:477-486.
- De Freitas T.R.O., Fernandes F.A., Fornel R., Roratto P.A. 2012. An endemic new species of tuco-tuco, genus Ctenomys (Rodentia: Ctenomyidae), with a restricted geographic distribution in southern Brazil. Journal of Mammalogy 93:1355-1367.
- Degen A.A. 1988. Ash and electrolyte intakes of the fat sand rat, Psammomys obesus, consuming saltbush, Atriplex halimus, containing different water content. Physiological Zoology 61:137-141.
- Devictor V., Clavel J., Julliard R., Lavergne S., Mouillot D., Thuiller W., Venail P., Villeger S., Mouquet N. 2010. Defining and measuring ecological specialization. Journal of Applied Ecology 47:15-25.
- Edgar R.C. 2016. UNOISE2: improved error-correction for Illumina 16S and ITS amplicon sequencing.
- Edgar R.C., Flyvbjerg H. 2015. Error filtering, pair assembly and error correction for next-generation sequencing reads. Bioinformatics 31:3476-3482.
- Eurich J.G., McCormick M.I., Jones G.P. 2018. Direct and indirect effects of interspecific competition in a highly partitioned guild of reef fish. Ecosphere 9:e02389.
- Ferry-Graham L.A., Bolnick D.I., Wainwright P.C. 2002. Using functional morphology to examine the ecology and evolution of specialization. Integrative and Comparative Biology 42:265-277.
- Flather C.H., Sieg C.H. 2007. Species rarity: definition, causes, and classification. In: Raphael M.G., Molina R., editors. Conservation of rare or little-known species: biological, social, and economic considerations. Island Press, Washington, District of Columbia, USA; p. 40-66.
- Futuyma D.J., Moreno G. 1988. The evolution of ecological specialization. Annual Review of Ecology and Systematics 19:207-233.
- Galanti L., Shasha D., Gunsalus K.C. 2021. Pheniqs 2.0: accurate, high-performance Bayesian decoding and confidence estimation for combinatorial barcode indexing. BMC Bioinformatics 22:359.
- Galiano D., Bernardo-Silva J., de Freitas T.R.O. 2014a. Genetic pool information reflects highly suitable areas: the case of two parapatric endangered species of tuco-tucos (Rodentia: Ctenomiydae). PLoS One 9:e97301.
- Galiano D., Kubiak B.B. 2021. Environmental and ecological features of the genus Ctenomys. In: Freitas T.R.O., Goncalves G.L., Maestri R., editors. Tuco-tucos. Springer.
- Galiano D., Kubiak B.B., Overbeck G.E., de Freitas T.R.O. 2014b. Effects of rodents on plant cover, soil hardness, and soil nutrient content: a case study on tuco-tucos (Ctenomys minutus). Acta Theriologica 59:583-587.
- Gaston K.J. 1994. Rarity. Chapman & Hall, London, United Kingdom; p. 1-21.
- Gaston K.J., Blackburn T.M., Lawton J.H. 1997. Interspecific abundance -range size relationships: an appraisal of mechanisms. Journal of Animal Ecology 66:579-601.
- Genoways H.H., Hamilton M.J., Bell D.M., Chambers R.R., Bradley R.D. 2008. Hybrid zones, genetic isolation, and systematics of pocket gophers (genus Geomys) in Nebraska. Journal of Mammalogy 89:826-836.
- Goheen J.R., Swihart R.K., Robins J.H. 2003. The anatomy of a range expansion: changes in cranial morphology and rates of energy extraction for North American red squirrels from different latitudes. Oikos 102:33-44.
- Golcher-Benavides J., Wagner C.E. 2019. Playing out Liem's paradox: opportunistic piscivory across Lake Tanganyikan cichlids. American Naturalist 194:260-267.
- Grace J.B., Johnson D.J., Lefcheck J.S., Byrnes J.E.K. 2018. Quantifying relative importance: computing standardized effects in models with binary outcomes. Ecosphere 9:e02283.
- Grant P.R. 1972. Interspecific competition among rodents. Annual Review of Ecology and Systematics 3:79-106.
- Grant P.R., Grant B.R. 2006. Evolution of character displacement in Darwin's finches. Science 313:224-226.
- Hairston N.G. 1980. The experimental test of an analysis of field distributions: competition in terrestrial salamanders. Ecology 61:817-826.
- Hamel S., Killengreen S.T., Henden J.-A., Yoccoz N.G., Ims R.A. 2013. Disentangling the importance of interspecific competition, food availability, and habitat in species occupancy: recolonization of the endangered Fennoscandian arctic fox. Biological Conservation 160:114-120.
- Herrmann N.C., Stroud J.T., Losos J.B. 2020. The evolution of 'ecological release' into the 21st century. Trends in Ecology & Evolution 36:206-215.
- Hoffman J.D., Choate J.R. 2008. Distribution and status of the yellow-faced pocket gopher in Kansas. Western North American Naturalists 64:483-492.
- Holbrook J.D., Olson L.E., DeCesare N.J., Hebblewhite M., Squires J.R., Steenweg R. 2019. Functional responses in habitat selection: clarifying hypotheses and interpretations. Ecological Applications 29:e01852.
- Howard W.E. 1952. A live trap for pocket gophers. Journal of Mammalogy 33:61-65.
- Howard W.E., Childs H.E. 1959. Ecology of pocket gophers with emphasis on Thomomys bottae mewa. Hilgardia 29:277-358.
- Huntly N., Inouye R. 1988. Pocket gophers in ecosystems: patterns and mechanisms. BioScience 38:786-793.
- Huntly N., Reichman O.J. 1994. Effects of subterranean mammalian herbivores on vegetation. Journal of Mammalogy 75:852-859.
- Ingles L.G. 1952. The ecology of the mountain pocket gopher, Thomomys monticola. Ecology 33:87-95.
- Ivan J.S., Swihart R.K. 2000. Selection of mast by granivorous rodents of the central hardwood region. Journal of Mammalogy 81:549-562.
- Iwanowicz D.D., Vandergast A.G., Cornman R.S., Adams C.R., Kohn J.R., Fisher R.N., Brehme C.S. 2016. Metabarcoding of fecal samples to determine herbivore diets: a case study of the endangered Pacific pocket mouse. PLoS One 11:e0165366.
- Jacobs J. 1974. Quantitative measurement of food selection. Oecologia 14:413-417.
- Jones C.A., Baxter C.N. 2004. Thomomys bottae. Mammalian Species 742:1-14.
- Kartzinel T.R., Chen P.A., Coverdale T.C., Erickson D.L., Kress W.J., Kuzmina M.L., Rubenstein D.I., Wang W., Pringle R.M. 2015. DNA metabarcoding illuminates dietary niche partitioning by African large herbivores. Proceedings of the National Academy of Sciences of the United States of America 112:8019-8024.
- Keinath D.A., Griscom H.R., Andersen M.D. 2014. Habitat and distribution of the Wyoming pocket gopher (Thomomys clusius). Journal of Mammalogy 95:803-813.
- Kenagy G.J. 1972. Saltbush leaves: excision of hypersaline tissue by a kangaroo rat. Science 178:1094-1096.
- Kenagy G.J. 1973. Adaptations for leaf eating in the Great Basin kangaroo rat, Dipodomys microps. Oecologia 12:383-412.
- Kennerly T.E. Jr. 1959. Contact between the ranges of two allopatric species of pocket gophers. Evolution 13:247-263.
- Lack D. 1947. Darwin's finches. Cambridge University Press.
- Lefcheck J.S. 2016. piecewiseSEM: piecewise structural equation modeling in R for ecology, evolution, and systematics. Methods in Ecology and Evolution 7:573-579.
- Lister B.C. 1976. The nature of niche expansion in West Indian Anolis lizards I: ecological consequences of reduced competition. Evolution 30:659-676.
- Litvaitis J.A. 2000. Investigating food habits of terrestrial vertebrates. In: Pearl M.C., Boitani L., Fuller T.K., editors. Columbia University.
- Lovy M., Skliba J., Hrouzkova E., Dvorakova V., Nevo E., Sumbera R. 2015. Habitat and burrow system characteristics of the blind mole rat Spalax galili in an area of supposed sympatric speciation. PLoS One 10:e0133157.
- Luna F., Antinuchi C.D. 2006. Cost of foraging in the subterranean rodent Ctenomys talarum: effect of soil hardness. Canadian Journal of Zoology 84:661-667.
- MacArthur R.H. 1958. Population ecology of some warblers of northeastern coniferous forests. Ecology 39:599-619.
- MacArthur R.H. 1972. Geographical ecology. Harper & Row, New York City, New York, USA.
- Mares M.A., Ojeda R.A., Borghi C.E., Giannoni S.M., Diaz G.B., Braun J.K. 1997. How desert rodents overcome halophytic plan defenses. BioScience 47:699-704.
- Martin M. 2011. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet Journal 17:101.
- McDonald D.B., Parchman T.L. 2010. Genetics of the Wyoming pocket gopher, Thomomys clusius. Final Report to the Wyoming Game and Fish Department.
- Neet C.R., Hausser J. 1990. Habitat selection in zones of parapatric contact between the common shrew Sorex araneus and Millet's shrew S. coronatus. Journal of Animal Ecology 59:235-250.
- Otieno T.O., Goheen J.R., Webala P.W., Mwangi A., Osuga I.M., Ford A.T. 2019. Human- and risk-mediated browsing pressure by sympatric antelope in an African savanna. Biological Conservation 232:59-65.
- Pasch B., Bolker B.M., Phelps S.M. 2013. Interspecific dominance via vocal interactions mediates altitudinal zonation in Neotropical singing mice. The American Naturalist 182:E161-E173.
- Patton J.L., Hafner J.C., Hafner M.S., Smith M.F. 1979. Hybrid zones in Thomomys bottae pocket gophers genetic, phonetic, and ecologic concordance patterns. Evolution 33:860-876.
- Patton J.L., Selander R.K., Smith M.H. 1972. Genic variation in hybridizing populations of gophers (genus Thomomys). Systematic Zoology 21:263-270.
- Patton J.L., Smith M.F., Price R.D., Hellenthal R.A. 1984. Genetics of hybridization between the pocket gophers Thomomys bottae and Thomomys townsendii in Northeastern California. Great Basin Naturalist 44:431-440.
- Perissinotti P.P., Antenucci C.D., Zenuto R., Luna F. 2009. Effect of diet quality and soil hardness on metabolic rate in the subterranean rodent Ctenomys talarum. Comparative Biochemistry and Physiology, A. Comparative Physiology 154:298-307.
- Pringle R.M., Prior K.M., Palmer T.M., Young T.P., Goheen J.R. 2016. Large herbivores promote habitat specialization and beta diversity of African savanna trees. Ecology 97:2640-2657.
- R Core Team. 2020. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. www.R-project.org/.
- Rabinowitz D. 1981. Seven forms of rarity. In: Synge H., editor. The biological aspects of rare plant conservation. John Wiley, Chichester, United Kingdom; p. 205-217.
- Reichman O.J., Seabloom E.W. 2002. The role of pocket gophers as subterranean ecosystem engineers. Trends in Ecology & Evolution 14:44-49.
- Reveal J.L. 1981. The concept of rarity and population threats in plant communities. In: Morse L.E., Henefin M.S., editors. Rare plant conservation. New York Botanical Garden, Bronx, New York, USA; p. 41-46.
- Romanach S.S., Seabloom E.W., Reichman O.J. 2007. Costs and benefits of pocket gopher foraging: linking behavior and physiology. Ecology 88:2047-2057.
- Roughgarden J. 1972. Evolution of niche width. American Naturalist 106:683-718.
- Schmidt-Nielsen K. 1964. Desert animals. Oxford University Press, Oxford, United Kingdom.
- Schoener T.W. 1974. Resource partitioning in ecological communities. Science 185:27-39.
- Shipley B. 2000. A new inferential test for path models based on directed acyclic graphs. Structural Equation Modeling 7:206-218.
- Shipley L.A., Forbey J.S., Moore B.D. 2009. Revisiting the dietary niche: when is a mammalian herbivore a specialist? Integrative and Comparative Biology 49:274-290.
- Sikes R.S., The Animal Care and Use Committee of the American Society of Mammalogists. 2016. 2016 Guidelines of the American Society of Mammalogists for the use of wild mammals in research and education. Journal of Mammalogy 97:663-688.
- Soininen E.M., Gauthier G., Bilodeau F., Berteaux D., Gielly L., Taberlet P., Gussarova G., Bellemain E., Hassel K., Stenoder- Nielsen A., ET AL. 2015. Highly overlapping winter diet in two sympatric lemming species revealed by DNA metabarcoding. PLoS One 10:e0115335.
- Soininen E.M., Ravolainen V.T., Brathen K.A., Yoccoz N.G., Gielly L., Ims R.A. 2013. Arctic small rodents have diverse diets and flexible food selection. PLoS One 8:e68128.
- Stephens S.R., Orr T.J., Dearing M.D. 2019. Chiseling away at the dogma of dietary specialization in Dipodomys microps. Diversity 11:92-104.
- Stuart Y.E., Losos J.B. 2013. Ecological character displacement: glass half-full or half empty? Trends in Ecology and Evolution 28:402-408.
- Stubbendieck J., Hatch S.L., Kjar K.J. 1981. North American range plants. Nat. Resources Enterprises, Inc., Lincoln, Nebraska, USA.
- Taberlet P., Coissac E., Pompanon F., Gielly L., Miquel C., Valentini A., Vermat T., Corthier G., Brochmann C., Willerslev E. 2007. Power and limitations of the chloroplast trn L (UAA) intron for plant DNA barcoding. Nucleic Acids Research 7:e14.
- Thaeler C.S. Jr. 1968. An analysis of three hybrid populations of pocket gophers (genus Thomomys). Evolution 22:543-555.
- Thaeler C.S. Jr., Hinesley L.L. 1979. Thomomys clusius, a rediscovered species of pocket gopher. Journal of Mammalogy 60:480-488.
- Torbjorn R., Flouri T., Nichols B., Quince C., Mahe F. 2016. VSEARCH: a versatile open source tool for metagenomics. PeerJ 4:e2584.
- Torok J., Toth L. 1999. Asymmetric competition between two tit species: a reciprocal removal experiment. Journal of Animal Ecology 68:338-345.
- U.S. Geological Survey -Gap Analysis Project. 2017. Northern pocket gopher (Thomomys talpoides) mNPGOx_CONUS_2001v1 range map. http://doi.org/10.5066/F71G0K9T. Accessed 20 June 2020.
- Vaughan T.A. 1967. Two parapatric species of pocket gophers. Evolution 21:148-158.
- Verberk W.C.E.P., van der Velde G., Esselink H. 2010. Explaining abundance -occupancy relationships in specialists and generalists: a case study on aquatic macroinvertebrates in standing waters. Journal of Animal Ecology 79:589-601.
- Verts B.J., Carraway L.N. 1987. Thomomys bulbivorus. Mammalian Species 273:1-4.
- Verts B.J., Carraway L.N. 1999. Thomomys talpoides. Mammalian Species 618:1-11.
- Violle C., Thuiller W., Mouquet N., Munoz F., Kraft N.J.B., Cadotte M.W., Livingstone S.W., Mouillot D. 2017. Functional rarity: the ecology of outliers. Trends in Ecology and Evolution 32:356-367.
- Wiken E., Nava F.J., Griffith G. 2011. North American terrestrial ecoregions-level III. Commission for Environmental Cooperation, Montreal, Quebec, Canada.
- Wilson E.O. 1961. The nature of the taxon cycle in the Melanesian ant fauna. American Naturalist 95:169-193.
- Yackulic C.B. 2017. Competitive exclusion over broad spatial extents is a slow process: evidence and implications for species distribution modeling. Ecography 40:305-313.
- Zaccarelli N., Mancinelli G., Bolnick D.I. 2013. RInSp: an R package for the analysis of individual specialization in resource use. Methods in Ecology and Evolution 4:1018-1023.