Static String PPI data for PTMsToPathways package

These are static files that can be used with the PTMsToPathways R package if the databases (String, GeneMANIA, and PhosphositePlus) are down.

string_hs_hugo.tsv:

Mirrors the column structure of GetSTRINGdb.edges() within the PTMsToPathways package.
source | target | interaction | Weight

This data is created by the script scripts/string_to_hugo.r within the PTMsToPathways package.

STRING data is shareable via a CC BY 4.0 license.

hs_interactions_hugo.tsv:

GeneMANIA Homo sapiens interaction network download
Groups: Physical Interactions, Predicted, Pathway,
       Genetic Interactions
Output: TSV with HUGO gene symbols + edge weights + metadata

This data is created by the script scripts/genemania_hs_download.r within the PTMsToPathways package.

Kinase_Substrate_Dataset.txt

This dataset is derived from PhosphoSitePlus data licensed under CC BY-NC-SA 3.0. The processed dataset is distributed under the same license. Attribution to PhosphoSitePlus and the associated publication is required.